GgaINT0047765 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37168966-37170057:+
Coord C1 exon
chr7:37168966-37169064
Coord A exon
chr7:37169065-37169933
Coord C2 exon
chr7:37169934-37170057
Length
869 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCTCTCTTTTTTGGTTTCAGTCT
3' ss Score
9.18
Exon sequences
Seq C1 exon
CAAGCAGAAGAAGAGAACGAGTTGAGAAAAAAGCAGGAACAGGCCTTAATGGAAAAACTTATGGAACAGGAAGCGATGATGGAGCAGCAGGACCAAAAG
Seq A exon
GTACGGAGCAGACAGGTGTTACAGGTGGGATGTGTTCATCTGTTTTTCCTCACAGCTCGAAACCTGCAGCTCTGTGTAGAGCTTGAGTTGCCCAGACTTAGAGCTGCTCAGAAATGCGGTCTCTGGAAGTTTTCTCCTTTTGTGGGGAAAGCTAAACTAGACTGAAAGAACCCAATGTGTAGTAATTCAGCTTTGAAGGTTGCAAAATTCAGAAAGCTAAACAGACAAAAATGTGTCACCTAGGCCGTGTTGCTGTTGGCCACACTATTTTCCTGCTTTGGCTTTTTACCTGTCTAAAATCCTATCTGCATTCATTGTGCAGAGCCCCCTGTTGCTTGCAGGGATCTCCAGATCTTTCCCTGTTTGAGCATGCCAGCATGAGTCTGCCCCTGTTACCACTCGATAGGAATTTTCTGATCTTTTCTTTTTTTTCCTGAGCAAATGCTTTAGATGTGCTGGAGCTTTTCCACAGCTCCAGTGGCCGTTGTGTTGACTGAAGCTGCTTCGTGCAGCTCCCATGCTTAACAGGTGCCCTTAACCCCAGCCAGGCATTTTCCATTGGGTGGAAAGCCTGTTCTCCTCCTTCACTTAATACTGCTTGAAGGAGAAGACTTGGAGTCTTGGTTCCAAGTGAGGAGAAAGTTTAGGATTGAACTGCAAACCTAAGAAAGGGAAGCACCAGGTTAGCTTGTAACTCTAGCCATCACCCCCAGGACCTGAGCTCACCATGCTTTCCTTGCAAAACTGGGCAGAGAGTTGGCAGATACTGGTGTTGATTCCTGCAGGTGGGGTCTCCTGGTCTTTCAGACAGAGTAACCAAAGCAAAGATCCTTACAAATCCTTACAAATCCTCTCTTTTTTGGTTTCAG
Seq C2 exon
TCTCCTTCTCATAAAACAAAGAGGCAGCAGCAGGAGCTAATTGCAGAGCTCAGGAGGCGGCAGGTCAAGGATAACAGGCATGTGTACGAAGGGAAGGATGGTGCTATTGAAGATATTATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=NA C2=0.604
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGAAGAAGAGAACGAGT
R:
TATCTTCAATAGCACCATCCTTCCC
Band lengths:
214-1083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]