RnoINT0061648 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38669618-38670693:+
Coord C1 exon
chr3:38669618-38669716
Coord A exon
chr3:38669717-38670569
Coord C2 exon
chr3:38670570-38670693
Length
853 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTCTCTGCTTTTCTTCTCAGTCT
3' ss Score
9.1
Exon sequences
Seq C1 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTTATGGAAAAACTGTTAGAGCAAGAAGCCCTGATGGAGCAGCAGGATCCAAAG
Seq A exon
GTAAGAAGTTTCTGCTTCTCAGATTGGCCTGAGTGAAGCTCAAGTAGAAAGCGTTCTGAGCTAACTTGTGCAGGATCCTGACCACTCACTGCCTTCTGGTGGCAGGTGGGAAAAAGCTCATTATGTTGTTTAACAACTTCTGGAATGAAAGGGAATGCTTGTGAAGCCTCGCTAAGTTTACAGAGATAAGAATTTAGGTGTATATTCAGAGCCTCCATATAAGTTTATCCCTTGAACTAGGAAAGGCTCCATGGTATCTGAGGGTACTGACCTTCGTCAATAGCCTTGGCCAGGGAGGGCTGGAAGAAAGCTGAAGGACATTATGAGTAAAGTCCCTGAGCTTGCGGTGTTTTGCTGCAAGGTCTGAGAAGTCTGTGGTTATTAATAGCTATCTCTATGGCCATAGAAGCCATCAGGCCAAGGCGACAGCTCAGTTTGCATGCCAGGAATACCCAAGTCTCATGCCCAGCACCCATAAATGCTGGAGGCAAAGACAGATGTAGCTGTTTGCTAACCAGACTGTATTACTTAATGAGCTCTGGGTCAATGAAAGACTCTTCTCACAAAGCAAGGTAGGTATTCTTCTTCTCTCGCACACACATACACATACACATACACACACACACACACACACACACACACCTTTTACATTGCTGCCCAGCTGGGTTTTGTGTGTTCATAGCTTAGGAGTTTCTGTTGCCTTTCCAGAAGCTTCCTGAAATTTGGCATGTGAGCATTATGTTGGGATGGTAGTGTCTGTATTGTTGGCTGAGGCTGTTCAATAAAGCGCAGGCACACTTTTTAAAGTCCACATGGGGGTGCTGGTGTCATCAGTCTCTGCTTTTCTTCTCAG
Seq C2 exon
TCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGGCGACAAGTTAAAGATAACCGTCATGTGTACGAGGGAAAAGACGGCGCCATTGAAGACATTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=NA C2=0.532
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCAGAAGAGGAAAATGAGCTG
R:
TGTGATAATGTCTTCAATGGCGC
Band lengths:
222-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]