HsaINT0065138 @ hg19
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153496472-153497428:+
Coord C1 exon
chr2:153496472-153496570
Coord A exon
chr2:153496571-153497304
Coord C2 exon
chr2:153497305-153497428
Length
734 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGCCCTTCTTTCTTCTCAGTCT
3' ss Score
10.06
Exon sequences
Seq C1 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTCATGGAAAAACTCCTAGAGCAAGAAGCTCTGATGGAGCAGCAGGATCCAAAG
Seq A exon
GTAAGAAGTGCCGCACTCATGAGACAGGTCCGTGAGGAGAGGCTGAGAGGGCTCTTCAGAGCAAGCCATACAAAGGACCAGCAAGCCAGGTGTGCCCAGGATCCTGACCACTTCCTTCTGGTGCCTGGACACTTGGCAAATGGAAATATGCTCATTGATTACTTTGTTCTGCAACCACTGGAATGAGGCTAAGAGCATGTTTGTGTAGCATATCCAAGCGTATAGACATCTGGAACTTAGTTGGATATACAGAGAGGCCACACCAGATGACCCAGTGACCAGAGGGCTTAGCATCCAGAGAAGGCTTTATGCAGATGCCCATTGGTGCTGGCCTTGATAGCTGGAGGGACTTGCTAGCAGGAATGGAGGGAACATTTCATGGAGGGCAACCTCGTTAGTAGGTAAAGAGCATAAAGGCTGGCAGTCCAAAGTTTTCTTCATTGTGATCCTTGGCAACACAGTTTAAGACATCTATGGTCATTACCAGTTGCCTCTTGTTGCCGTAGACTCCAGCCTTCTTGTTGCTGCCAGGTGAAGTTTTGTGTGTTCGTCAGTGGAAGTTTTTGTTTCCTTCCCAGAAGCTTGAGTTCTCTGCAACTGAGCAGAATGTGGGATGTGTGTGTGTTTTTGGCCGAAGCTGCTTATTAGTAACATAATGCTCAGGCACATTTTGGATTTTCACAAACTCCTAATGGGTGCTGGCCTCACTAATCTCTGCCCTTCTTTCTTCTCAG
Seq C2 exon
TCTCCTTCTCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGACGACAAGTTAAAGATAACAGACATGTATATGAGGGAAAAGATGGTGCCATTGAAGATATTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827-FMNL2:NM_052905:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.571
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAAGAGGAAAATGAGCTGA
R:
CTGTGATAATATCTTCAATGGCACCA
Band lengths:
222-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)