HsaINT0065138 @ hg38
Intron Retention
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152639958-152640914:+
Coord C1 exon
chr2:152639958-152640056
Coord A exon
chr2:152640057-152640790
Coord C2 exon
chr2:152640791-152640914
Length
734 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTGCCCTTCTTTCTTCTCAGTCT
3' ss Score
10.06
Exon sequences
Seq C1 exon
CAAGCAGAAGAGGAAAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTCATGGAAAAACTCCTAGAGCAAGAAGCTCTGATGGAGCAGCAGGATCCAAAG
Seq A exon
GTAAGAAGTGCCGCACTCATGAGACAGGTCCGTGAGGAGAGGCTGAGAGGGCTCTTCAGAGCAAGCCATACAAAGGACCAGCAAGCCAGGTGTGCCCAGGATCCTGACCACTTCCTTCTGGTGCCTGGACACTTGGCAAATGGAAATATGCTCATTGATTACTTTGTTCTGCAACCACTGGAATGAGGCTAAGAGCATGTTTGTGTAGCATATCCAAGCGTATAGACATCTGGAACTTAGTTGGATATACAGAGAGGCCACACCAGATGACCCAGTGACCAGAGGGCTTAGCATCCAGAGAAGGCTTTATGCAGATGCCCATTGGTGCTGGCCTTGATAGCTGGAGGGACTTGCTAGCAGGAATGGAGGGAACATTTCATGGAGGGCAACCTCGTTAGTAGGTAAAGAGCATAAAGGCTGGCAGTCCAAAGTTTTCTTCATTGTGATCCTTGGCAACACAGTTTAAGACATCTATGGTCATTACCAGTTGCCTCTTGTTGCCGTAGACTCCAGCCTTCTTGTTGCTGCCAGGTGAAGTTTTGTGTGTTCGTCAGTGGAAGTTTTTGTTTCCTTCCCAGAAGCTTGAGTTCTCTGCAACTGAGCAGAATGTGGGATGTGTGTGTGTTTTTGGCCGAAGCTGCTTATTAGTAACATAATGCTCAGGCACATTTTGGATTTTCACAAACTCCTAATGGGTGCTGGCCTCACTAATCTCTGCCCTTCTTTCTTCTCAG
Seq C2 exon
TCTCCTTCTCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCAGAATTAAGAAGACGACAAGTTAAAGATAACAGACATGTATATGAGGGAAAAGATGGTGCCATTGAAGATATTATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827:ENST00000288670:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.697 A=NA C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGAAGAGGAAAATGAGCTGA
R:
CTGTGATAATATCTTCAATGGCACCA
Band lengths:
222-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development