BtaINT0063188 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30363572-30364135:+
Coord C1 exon
chr5:30363572-30363682
Coord A exon
chr5:30363683-30363985
Coord C2 exon
chr5:30363986-30364135
Length
303 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGTCTGCTCTTCCCTAGAAG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTGGCCTGCATGCAGTTTATCAACATCGTGGTGCACTCAGTGGAAGACATGAACTTCCGGGTCCACCTGCAGTATGAGTTCACAAAGCTGGGGCTGGAGGAGTTCCTGCAG
Seq A exon
GTGAGCTGGGCCGGAGTCCTCACAGTGGGAGGTGCTTCAGGACAGTTCAGGACAGAGGACCAGCTTAGCTGTATCACAGTGGGTGTTTCTTTTCTAAGAGCCTAGTCATGGATGCTCCTGGCACCCCACCTGTCTTCTGTGGCCTGGGATTCAGGCCTTCCCGCAGAGGGCTCAATCAGTCAGCTCCAGGGCCAAGAATCGGACACTGCTGCAGGAGGAACTCCCCGGGCCCTAGCTCTAGGAAGGGATCTTGGAGGGAATGAGGAGGCTCCCCCCACTACTACTCTGTCTGCTCTTCCCTAG
Seq C2 exon
AAGTCACGGCACACAGAGAGCGAGAAGCTGCAGGTGCAGATCCAGGCGTACCTGGACAACGTGTTCGATGTGGGGGGTTTGTTGGAGGATGCTGAGACCAAGAATGTGGCCCTGGAGAAGGTGGAAGAGCTGGAGGAGCATGTGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(18.1=100),PF061486=COG2=PU(11.0=43.2)
A:
NA
C2:
PF0636711=Drf_FH3=FE(24.6=100),PF061486=COG2=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGCATGCAGTTTATCA
R:
ATGTGACACATGCTCCTCCAG
Band lengths:
260-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]