MmuINT0065132 @ mm9

Intron Retention

Gene

ENSMUSG00000023008 | Fmnl3

Description

formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]

Coordinates

chr15:99155672-99156184:-

Coord C1 exon

chr15:99156074-99156184

Coord A exon

chr15:99155822-99156073

Coord C2 exon

chr15:99155672-99155821

Length

252 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGC

5' ss Score

9.88

3' ss Seq

TGCTCTTCACTTTTCCACAGAAG

3' ss Score

8.9

Exon sequences

Seq C1 exon

GTGGCCTGCATGCAGTTCATCAACATTGTGGTGCACTCGGTAGAGGACATGAACTTCCGGGTCCACCTGCAATATGAGTTTACCAAGTTGGGGCTGGAGGAATTCCTCCAG

Seq A exon

GTAAGCTGAGTATGACCTTGGAAAGGTGAAGTGTTTCAGGGTACAGTCAGCTTAGACACATAACTAAGTACAAGTAAGAATATAGTCCTAGATGGATCTGAAACCTTCCTGTTTTTGGCCTGGGACCTGGGTCCTTCTGCCAATGTCTGGAAGACACTGCTCTGGGAAGAGCTGTGAAGCAGGGACGGGGCACTGAGGGTTTCCAGGAGGCCTGTGCTGACTCCGTACATGCTGCTCTTCACTTTTCCACAG

Seq C2 exon

AAGTCGAGGCACACGGAGAGCGAGAAGTTGCAGGTGCAGATTCAAGCGTACCTGGACAATGTGTTTGACGTGGGGGGCTTGTTGGAAGATGCAGAAACCAAGAATGTAGCCCTGGAAAAGGTGGAAGAACTGGAGGAGCATGTGTCCCAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000023008-Fmnl3:NM_011711:11

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.008

Domain overlap (PFAM):

C1:

PF0636711=Drf_FH3=PU(13.9=95.2),PF061486=COG2=PU(9.7=66.7),PF101864=Atg14=PU(0.7=4.8)

A:

NA

C2:

PF0636711=Drf_FH3=FE(34.0=100),PF061486=COG2=FE(34.0=100),PF0014213=Fer4_NifH=PU(38.5=80.0),PF029949=Transposase_22=PU(28.6=60.0),PF101864=Atg14=FE(35.5=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000085566