MmuINT0065132 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99325241-99325753:-
Coord C1 exon
chr15:99325643-99325753
Coord A exon
chr15:99325391-99325642
Coord C2 exon
chr15:99325241-99325390
Length
252 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGCTCTTCACTTTTCCACAGAAG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTGCACTCGGTAGAGGACATGAACTTCCGGGTCCACCTGCAATATGAGTTTACCAAGTTGGGGCTGGAGGAATTCCTCCAG
Seq A exon
GTAAGCTGAGTATGACCTTGGAAAGGTGAAGTGTTTCAGGGTACAGTCAGCTTAGACACATAACTAAGTACAAGTAAGAATATAGTCCTAGATGGATCTGAAACCTTCCTGTTTTTGGCCTGGGACCTGGGTCCTTCTGCCAATGTCTGGAAGACACTGCTCTGGGAAGAGCTGTGAAGCAGGGACGGGGCACTGAGGGTTTCCAGGAGGCCTGTGCTGACTCCGTACATGCTGCTCTTCACTTTTCCACAG
Seq C2 exon
AAGTCGAGGCACACGGAGAGCGAGAAGTTGCAGGTGCAGATTCAAGCGTACCTGGACAATGTGTTTGACGTGGGGGGCTTGTTGGAAGATGCAGAAACCAAGAATGTAGCCCTGGAAAAGGTGGAAGAACTGGAGGAGCATGTGTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(18.1=100),PF061486=COG2=PU(11.9=45.9)
A:
NA
C2:
PF0636711=Drf_FH3=FE(24.6=100),PF061486=COG2=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTGCATGCAGTTCATC
R:
TGGGACACATGCTCCTCCAG
Band lengths:
260-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types