RnoINT0061680 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140989791-140990357:-
Coord C1 exon
chr7:140990247-140990357
Coord A exon
chr7:140989941-140990246
Coord C2 exon
chr7:140989791-140989940
Length
306 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGCTCTCTGCTTTTCCACAGAAG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTGGCCTGCATGCAGTTCATCAACATTGTGGTACACTCGGTAGAGGACATGAACTTCCGGGTCCACCTGCAATATGAGTTTACCAAGTTGGGGCTGGAGGAATTCCTACAG
Seq A exon
GTAAGCTATGATCTTGGAAAGGTGAAGTCTCAGGGTAGGGAATCAGCTTAGACAACACACACAAAGAGCGTGGGTTTTTTGGTCTTTGGTTTTTGGTTTAATAAGAATATTTAAAAACAAGTAAGAATATAGTCCTAAATGGATCTGGAACCTGCCTGTCCTTGGCCTGGGACTGGGACCCTTTTCCCAATGTCTGGAAGACACTGGTCACATGCTAAGAGGGAGTTGTGAAGCAATGATGGGGTACTGGGAGTTTCCAGGAGGCCTGTGCTGACTCCGTACATGCTGCTCTCTGCTTTTCCACAG
Seq C2 exon
AAGTCAAGGCACACGGAGAGCGAGAAATTACAGGTGCAGATTCAGGCATACCTGGACAATGTGTTTGACGTGGGGGGCTTATTGGAGGATGCGGAAACCAAGAATGTAGCCCTGGAAAAGGTGGAAGAACTGGAGGAGCATGTGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(18.0=100),PF061486=COG2=PU(21.1=94.6)
A:
NA
C2:
PF0636711=Drf_FH3=FE(24.5=100),PF061486=COG2=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGCATGCAGTTCATCAAC
R:
TGAGACACATGCTCCTCCAGT
Band lengths:
257-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]