BtaINT0063190 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30364578-30365856:+
Coord C1 exon
chr5:30364578-30364679
Coord A exon
chr5:30364680-30365576
Coord C2 exon
chr5:30365577-30365856
Length
897 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
TGGTGCCCTCTGCCCAACAGGAG
3' ss Score
8.22
Exon sequences
Seq C1 exon
CTCACAGAGAAGCTTCTGGACCTAGAGAATGAAAACATGATGCGTGTGGCGGAGCTAGAGAAGCAACTGCTGCAGCGGGAGAAGGAACTCGAGAGCGTCAAG
Seq A exon
GTACGAAGTTACCTGGGGAAGGCGCCCCTGGGCGCTGGGGCCAGGGAAACTTGCTTTCCATCTCTGAGTCATGTCAAGTCCTCAAGAATCCAGATCTTGATTCACCCTTGGAACACTGATGATTTCACCCCAGGATCTAGCTGGAGAGGGAAGCTGGAGCCAGAGTGGGCCAGATGCACACACAGAAGGGTGGAGACCCCTCGAGTTCCCGCCTTCTCCTCCAGCCCGTCCCCCTGCTTCTCCCTTGCCTGCACCTCCACTGCTTTCCCAGCCCAGCTCCTTGGGGCTGTTTGTTAGGGTTTCTACCAGGCATCCCATACTGGAGGGCAAGGCTTCCTCATATTTCAGTGTCTTCTCTGTCCCTCATTGAACTTTATGTAGTTGCAAAATCATGCCCCAACCTACCTGTTCTCCCACAGGAATACAGTTATGCCAGCTCTGTTGAGCCCAGCACACATCCGCCAAGCCCCTGCTAAGAGTCTGAAGTGCTCTGTCAGGAGTATGGAGGACACAGAGGTGGCTAAGGCAGGGCCTCGTCCATAGGGGGCTTCCAGCTGAGCAGTTGTACAAACCAGATGGAACGAGAGCAGGCCTGAGGCACCAAGGGCTGAGAGCAGCCATAGCAGGCTGCTGGTGGTTGAGGGAGCATCTACAAGGCAACTTCCACCCAAGTCTTGAGGGACCAGTGAAACTGGACTGGACCACTGCCGGGTGCCGGCCAGGTGGTCGATGCTTCCATTCACCTCTTGTTACTTTGCATCCTAGCTTCCCCCAGTCCCCACCTGGGTTTCTGCTGCTCTTTGCCTCTGAACACTCTCCTGGAGACCCCGGTGTAGGAAGCCTCCCTCCCAGAGGCCTTCAGGTGCTCTTTTCCTGATGGTGCCCTCTGCCCAACAG
Seq C2 exon
GAGACTTACGAGAACACAAGCCACCAGGTACACACCCTGCGGCGGCTCATTAAAGAGAAAGAGGAGGCCTTCCAGCGCCGGTGCCACTTGGAGCCCAGTGCCCGGGGCCTGGAGTCCATGGGCAGCGAGGCTCTGGCCCGGGTGGGCTCTGCGGAGCTGAATGAGGGCATGCCCCACTCCGACCTGGACCTCCTCACTCTGGCCCCCCCTGCTGAGGAGGCCCTGCCCCTGCCTCCACCGCCAGCTCCTCCCTTGCCCCCGCCTCCTCCCCCGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.894
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.6=100),PF061486=COG2=FE(22.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(18.6=39.4),PF061486=COG2=PD(30.1=46.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACATGATGCGTGTGGC
R:
CTGGTAACGGGGGAGGAGG
Band lengths:
353-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]