MmuINT0065134 @ mm9

Intron Retention

Gene

ENSMUSG00000023008 | Fmnl3

Description

formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]

Coordinates

chr15:99153751-99155273:-

Coord C1 exon

chr15:99155172-99155273

Coord A exon

chr15:99154031-99155171

Coord C2 exon

chr15:99153751-99154030

Length

1141 bp

Sequences

Splice sites

5' ss Seq

AAGGTGCCA

5' ss Score

3.41

3' ss Seq

TGTTGCTGTCTGCCTGATAGGAG

3' ss Score

8.39

Exon sequences

Seq C1 exon

CTCACAGAGAAGCTCCTGGACCTGGAGAATGAGAATATGATGCGGGTGGCAGAACTGGAGAAGCAGCTGCTACAGCGGGAAAAGGAGCTGGAGAGCATCAAG

Seq A exon

GTGCCAGGGAGGGGAGGGGCAGTGGGGCGGCCTCTGCTCACCCAGATTCCAGTCCTCTCCTAGGCACTTCTTTTCTTCTCAGATCATGTCAAGGGAAGACACTAATCTATGCCCAGCACTCAGGCAAGGATGACCTGGTGATCCACCCTACCTCCTGGGTTTTTTTTTTTTCTTCCTCCTCCTCCTCTCTCCTCCCTCCTTCTTTCTTCTTGAGATAGGATTTCTCTATGTGGCCCTGGCTATTCTAGAACTCAGTCTATAGACTAGGCTGCCCTCGAATTCAGAGATCTCTCCTGCCTCCGCCTCCTAGATCCTGGGGTTAAAGGTGTGTACCACCACCGCCTCGCTTCCTCCCCATGATTTATCTTGAGAGAGAATCTCGAAGCTGGAGTTGGCCAGACCCGGACGAGAATGGGAGTGGATGATGTGCTCCTGGTCCCCTAGGATCCAGGGCAGGCAGGCTTCCTGTCCACTTGCTGGCTTGTTCTTCAAATGCTTCTCCGCTCTTTACTGAGCATGGTTAGAGTAGCCCGACTGCTTATTACTGTCTACAGGGGTCCTGGAGGGCAGTGCTTCTCCTATTTCAGTCTCTTGAGTTTTTTCTCCTAACTTTATAGCTTAGTTATAAAGCCACAACCTCTTTGTCTTGGAAGAATATGGTTATGTGGCTACTGAGCGCGGCTCAGTGGATATCTGCTTATCCCTTCCTAGTACTGGAGAGGGAGCCAGGAAGGATAGAGCGATCACAAAGGCTTCTCCGTGAACCTCCCATCTGAGCTGGTATCCACAGCCAATGAAATAAAAGCAGTAATGAAGACGTAAGGTCTGTGGAGAGAGCAGCAGTGCCCATCTAGCAGGGGACCAATGGGAGTTTCAAAGGGGCATCCTTTTCCTTCAGCCTTGAGGGCCCTATGCAGTGAGAACAGACTTGAGCAGAGAAAGATGACCTATTACCAGTGGAAGCAAGCTTTCTTTTCTGCTCTGCCACACTCCAGCTTTGCTGTTCCTGGATTTCTTCTATTTTGAGCACACTGAGATGACCCTTCTTGGGAATCTGTTGGGTAGGAATTCTGACTCCCAGGGGAACTGACTATAGAGCCTTCAGCCCATTCTTCCCTCAATGTTGCTGTCTGCCTGATAG

Seq C2 exon

GAGACATATGAGAACACAAGCAACCAGGTGCATACTCTTCGGAGGCTCATTAAGGAAAAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGGGCCTGGAATCCATGGGCGGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGTTGACTGAAGGCATCCCACCCTCTGACTTGGACCTGCTGGCTCCAGCCCCACCTACTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCTCCCCCTTTGCCTCCGCCCCCTCCTCCACTACCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000023008-Fmnl3:NM_011711:13

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.429 A=NA C2=0.918

Domain overlap (PFAM):

C1:

PF0636711=Drf_FH3=FE(22.9=100),PF061486=COG2=FE(22.9=100),PF0014213=Fer4_NifH=FE(31.7=100),PF029949=Transposase_22=FE(31.4=100),PF101864=Atg14=FE(23.9=100)

A:

NA

C2:

PF0636711=Drf_FH3=PD(18.6=39.4),PF061486=COG2=PD(24.2=42.6)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000085566