MmuINT0065134 @ mm10
Intron Retention
Gene
ENSMUSG00000023008 | Fmnl3
Description
formin-like 3 [Source:MGI Symbol;Acc:MGI:109569]
Coordinates
chr15:99323320-99324842:-
Coord C1 exon
chr15:99324741-99324842
Coord A exon
chr15:99323600-99324740
Coord C2 exon
chr15:99323320-99323599
Length
1141 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
TGTTGCTGTCTGCCTGATAGGAG
3' ss Score
8.39
Exon sequences
Seq C1 exon
CTCACAGAGAAGCTCCTGGACCTGGAGAATGAGAATATGATGCGGGTGGCAGAACTGGAGAAGCAGCTGCTACAGCGGGAAAAGGAGCTGGAGAGCATCAAG
Seq A exon
GTGCCAGGGAGGGGAGGGGCAGTGGGGCGGCCTCTGCTCACCCAGATTCCAGTCCTCTCCTAGGCACTTCTTTTCTTCTCAGATCATGTCAAGGGAAGACACTAATCTATGCCCAGCACTCAGGCAAGGATGACCTGGTGATCCACCCTACCTCCTGGGTTTTTTTTTTTTCTTCCTCCTCCTCCTCTCTCCTCCCTCCTTCTTTCTTCTTGAGATAGGATTTCTCTATGTGGCCCTGGCTATTCTAGAACTCAGTCTATAGACTAGGCTGCCCTCGAATTCAGAGATCTCTCCTGCCTCCGCCTCCTAGATCCTGGGGTTAAAGGTGTGTACCACCACCGCCTCGCTTCCTCCCCATGATTTATCTTGAGAGAGAATCTCGAAGCTGGAGTTGGCCAGACCCGGACGAGAATGGGAGTGGATGATGTGCTCCTGGTCCCCTAGGATCCAGGGCAGGCAGGCTTCCTGTCCACTTGCTGGCTTGTTCTTCAAATGCTTCTCCGCTCTTTACTGAGCATGGTTAGAGTAGCCCGACTGCTTATTACTGTCTACAGGGGTCCTGGAGGGCAGTGCTTCTCCTATTTCAGTCTCTTGAGTTTTTTCTCCTAACTTTATAGCTTAGTTATAAAGCCACAACCTCTTTGTCTTGGAAGAATATGGTTATGTGGCTACTGAGCGCGGCTCAGTGGATATCTGCTTATCCCTTCCTAGTACTGGAGAGGGAGCCAGGAAGGATAGAGCGATCACAAAGGCTTCTCCGTGAACCTCCCATCTGAGCTGGTATCCACAGCCAATGAAATAAAAGCAGTAATGAAGACGTAAGGTCTGTGGAGAGAGCAGCAGTGCCCATCTAGCAGGGGACCAATGGGAGTTTCAAAGGGGCATCCTTTTCCTTCAGCCTTGAGGGCCCTATGCAGTGAGAACAGACTTGAGCAGAGAAAGATGACCTATTACCAGTGGAAGCAAGCTTTCTTTTCTGCTCTGCCACACTCCAGCTTTGCTGTTCCTGGATTTCTTCTATTTTGAGCACACTGAGATGACCCTTCTTGGGAATCTGTTGGGTAGGAATTCTGACTCCCAGGGGAACTGACTATAGAGCCTTCAGCCCATTCTTCCCTCAATGTTGCTGTCTGCCTGATAG
Seq C2 exon
GAGACATATGAGAACACAAGCAACCAGGTGCATACTCTTCGGAGGCTCATTAAGGAAAAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGGGCCTGGAATCCATGGGCGGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGTTGACTGAAGGCATCCCACCCTCTGACTTGGACCTGCTGGCTCCAGCCCCACCTACTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCTCCCCCTTTGCCTCCGCCCCCTCCTCCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023008:ENSMUST00000088233:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.6=100),PF061486=COG2=FE(20.0=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(18.6=39.4),PF061486=COG2=PD(24.2=42.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAGAAGCTCCTGGACC
R:
GTGGAGGAGGCAGAGGAAGAG
Band lengths:
342-1483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types