RnoINT0061660 @ rn6
Intron Retention
Gene
ENSRNOG00000056297 | Fmnl3
Description
formin-like 3 [Source:RGD Symbol;Acc:1583854]
Coordinates
chr7:140987866-140989411:-
Coord C1 exon
chr7:140989310-140989411
Coord A exon
chr7:140988149-140989309
Coord C2 exon
chr7:140987866-140988148
Length
1161 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
TGTTGCTGTCTGCCTGCTAGGAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
CTCACAGAGAAGCTTCTGGACCTGGAGAATGAGAATATGATGCGGGTGGCAGAACTGGAGAAGCAGCTGCTACAGCGGGAAAAGGAGCTGGAGAGCATCAAG
Seq A exon
GTGCCAGTAAGGGGAGGGGGCAGTGGGACCCAGGTCCCAGCGCCTCAGGACTTCCTTCTCTTCCCAAATCTTGTCAAGGGAAGATACTGAGCTGAGCTGAGCACTCAGCAAAGGTGACCTGATGATCCACCCCTAGCTCCTGGTTTGTTTTTTTTCCTTCCTCCTCTTCCTCTCTTTCTCTCTACTTCTTCCTTCTCCTTCCTTCTTTCTTTTCTTCTTCTTGAGACAGGGTTTCTTTCTGTGGCCCTGGCTGTTCTAGACCAGGCTACCCTTCAACTCAGAGATCCCTCTGGCCTCTGCATCCCAAATCCTAGGATTAAAGGTGTGCACCACCACTGCCCTGCTTCCTTCCCATGATTTTATCTTGAGAAAGAATCTTGAAGCTGGAGTTGGCCAGACCCAGAAGAGAATGGGGGCAGATAATGTGCTCGTGGAACCCTAGAATCCAGGGCAGGCCGGTCGTCTTCTTCCTGCCCACTTGCTGACTTGGTCTTCATATGCTTCCCAGCTGTTTACTGGGCATGGTTAGAGTAGCCCACCTGTTTATCACCGTCTCCCAGTGTCCTGGAGGGCAGTGCTTCTCATATTTCAGTCTCTTACGTTCTTTCTCCTAACTTTATACCTTAGTTATAAAGCTAACCCACAACCTCCGTGTCTCAGAAGAATATGGTTATGTTGGCTACTGAGCTCAGCTCAGTGTATATCTGCTTATCCCCGCCTAGCACTAGAGAGGGAGCAGGAAGGATATAGAGACTACAAAGGCTTATCCATGAAGCACCCACCTGATCATTATCCACAGCCAATGAAATAAAATCAATAACGACCTAAGGTCTGTGGAGAGAGCAGCAGTGCCCATCTAGCAGGGGACCAATGGGAGTTTCAAAGGGGCGTCCTTTTTCTTCAGGCCTGAGGGGCCTATGCAGTGAGAACAGACGAGCAGAGAAAAAGGACATATCAGAATACCAGTGGAAGCAAGCTTACTCTTCTGTTCTACCACACGCCAGCTTTGCTGTTCCTCATCTGGATTTCTTCTATTCTGAGCACCCTCACTGAGATGACCCTTCCTGAGAGGAGAGTCTGTTGGCTAGGAATTCTGACTCCCAGGGGAACTGACTGGAGCCTGCAGCCTGTTCTCCCTCAATGTTGCTGTCTGCCTGCTAG
Seq C2 exon
GAGACATACGAGAACACAAGCAACCAGGTGCACACCCTTCGGAGGCTCATTAAGGAGAAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGAGCCTGGAATCCATGGGTGGGAGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGCTGACTGAAGGCTCGACACCCTCCGACCTGGACCTGCTGGCTCCAGCCCCACCTGCTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCCCCGCCTTTGCCCCCACCCCCTCCTCCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056297:ENSRNOT00000092068:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.937
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(16.5=100),PF061486=COG2=FE(19.6=100)
A:
NA
C2:
PF0636711=Drf_FH3=PD(19.0=40.0),PF061486=COG2=PD(26.8=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGCTTCTGGACCTGG
R:
GTGGAGGAGGCAGAGGAAGAG
Band lengths:
342-1503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]