BtaINT0063353 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50146800-50146984:-
Coord C1 exon
chr3:50146961-50146984
Coord A exon
chr3:50146916-50146960
Coord C2 exon
chr3:50146800-50146915
Length
45 bp
Sequences
Splice sites
5' ss Seq
TGGATAAAA
5' ss Score
-4.91
3' ss Seq
GTTTTATCTTCCTTTTCTAGGAT
3' ss Score
12.74
Exon sequences
Seq C1 exon
AGAAACTGGTTAAAATATTTGTGG
Seq A exon
ATAAAACTTCAGCCTTTTCAGTGTGGTTTTATCTTCCTTTTCTAG
Seq C2 exon
GATCAGTTCGACAGCTTAGACAAGCATACACAATGGGGAATTGACTTCTTGGAAAGATATGCCAAATTTGTTAAAGAGAGGATAGAAATTGAACAGAACTATGCGAAACAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(7.5=87.5)
A:
NA
C2:
PF0061118=FCH=FE(40.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]