GgaINT0035263 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12841913-12843013:-
Coord C1 exon
chr8:12842990-12843013
Coord A exon
chr8:12842029-12842989
Coord C2 exon
chr8:12841913-12842028
Length
961 bp
Sequences
Splice sites
5' ss Seq
TGGCAAAGT
5' ss Score
-6.22
3' ss Seq
TGTTTCCTTTTGTTTTTAAGGAT
3' ss Score
11.12
Exon sequences
Seq C1 exon
TCAGATAAAGGAACAGAGTTGTGG
Seq A exon
CAAAGTTTGTGGCACTTTGGCAGTGATTAAATACTTCTGTAAAGTGTGACATGTCAAATGTACTCAGGTTTTCCAGTCCAGTTTCATATTGGTACCTGAGAAGAAATTTTCACCAGTAGAGTCGTTGTTCTTTTGAGCAAAATATTTGGAAAGCCGTTGTCCCTGATTGTGTATTCTGAAACTCATTTGTGAAATCAGTTGATCAGTAATGTTAATCAGTACAGAATACAGTGGAAGATGAGTTTTGGAGATCATTTATTAATAAATCGCCACTTACTTTTTGGAGTTATTTTTGGTCCTCTTGTTTGCTTTGTGCATTTGCTTTCCTCTAACATTTATAATGGGTAAGGACAGGTTTGCTTTCTTTAGAATCTCTTGCTAGAACTGATGATGCACTTTGTGTATAGATTTACTTTAATAAATGTTTTCATATGCTGCCTATGCCCAACTTAGTCATGCAGCTATCATTTACATTATTTTTGTTTCAGTGGACAATCTTATGAGTAGAATTACTTTCTCATATCAAACAAAATTACTACTGCCTGTGTTTTTCTATTAAAAAAAAAAAAGTACATCATTTTAGTTGAACAGCAGCCTGCTAGTTACATAATACTTATCTCTGGTTGTGTCTTAATTTGGTGGAAAACTTGTGAATGAGAGGATTTTTAGGGCAAAACAAGGTGCATTTGCATTGTGAAAGTGATCAAAGGATGTACACAATTTAAATGAAGACATCTAGAGCTCTTTTCAGAGAAAGAGCTTGATCAGTACCTGGGCATACAGCTTTCTGTTCCTGTATGTAGTCAGTGTACATACAATCATCGGGCTGATTTGTAATTTTAATGACTTCAGTTCAAATAGCAAGCATTCCCTCAAAGCGCAGCCCATGGGTTATGTGTTGTTTCTGGTGTTGGTGCAATTCTTCACTCACTCGGTATTCTTGTTTCCTTTTGTTTTTAAG
Seq C2 exon
GATCAGTTCGATAACTTAGACAAGCATACACAGTGGGGCATTGACTTCTTGGAGAAATATGCAAAATTTGTAAAAGAAAGGATAGAAATTGAGCAAAACTATGCAAAACAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(6.5=75.0)
A:
NA
C2:
PF0061118=FCH=FE(41.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]