BtaINT0063360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50124825-50126305:-
Coord C1 exon
chr3:50126252-50126305
Coord A exon
chr3:50124973-50126251
Coord C2 exon
chr3:50124825-50124972
Length
1279 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ATTTTTAATGTTTTTGTCAGGTT
3' ss Score
7.55
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGTTCCTCCAAAGATGAAGAGCCAAG
Seq A exon
GTAAATTATATACCTATTTATTATTGCTTATGAAAATTTAAAAGAGTATATTTTTGTTATTTAGTAAAATAAATATTATACTATTAGCTTTTTATAAAAATTTTAACAAGATTTGTATCATAATAAAAAATTATGTTTATGACAGAGGAAAGTACTATTTTTTCTTATGAGAATGCATATTTCAGTGGGCTTGATGATAGCTTTTTAGGATAGTTGATGTATGAGTTCTAAGTAATAGGTGGATTGGGACTCCACTTGAATGAATGTAGTCTCCAGAAGAGAAGGGTATTTTTTTCCATACTTTATTTTGTAGTTGTCAGCTTGTTAGATTCTTGATTTTTCTTTTACAAATAGTAAAACAATTTAGCTGGTTGGGTTAAAGGGGTAATGAAAAGGAATAGGTTTTCAGAGTAATTTTGGAACTCTGAATAAATGTTTAGGGATTGCCTACAAGCTTTCTGGCATTCTTACACACGGGGATACGTGGATGGTTGTAAAATGCAGAAACAAAAAGAAACTGGATGGTTGTAAAATGCAGAAACAAAGACTAAACTTAAAACAACTTTGTGTATGATTGTCAGTTATTTAGAGGAGTCTTTGGTTTAGTGTTAATGGAGTCCTGTCTGAGCTGTGTGCCTTCAGCTTACATAAGAGCGTTCTGGCAGTGTATTCAAGTAGATCTATACATTTTAATAGAGTTATTTTCTTTGTCTCTCTCCTTCCCTCCACACACATTTCTTTTTACCCTTATTTCTGCCCCTTCTTACCCTCTGTGGTGCCAACCAAAGTGGCACCTCACTTCCATTCAGGATGTGGGCAGGCATACAGGCAGCTGTGTCCAGAGCTGATAGCAAAATTGTTTGTAGATCACCCATCGAGATGCATTTGAGTGGTATGATTGGCAGGTTCTGTCCTGGAGAGCAAGCACATCATCTCTGCAACAGGCTCAGCTGCCAAGCCTAGGAATCCAACCAAGTTCATTCCCAAGCTCAGGCCAGTCAGTTGGCAACGTAAGAGATTCCAGTATGCCAAAAGAGCCTGCAGGTAGTATTCTTATTATTTTTTGACCCCCAAATCCTTTTATTGATAAATTATGACTACCTGGAAATATATAAACATGTACAACTTGAGCTTAAGGCAGAGCTTAATTTAGAGCTAGTAGCTGAGATTTAGGATGCATATGTTAAAATTGGTTAAGTGTCAGGTTTGATCTGTATCTCACAAAAATATTTGTAATGAGAATAAAAATAAATTTTGCCATTTTTAATGTTTTTGTCAG
Seq C2 exon
GTTTACTTCGTGTATAGCCTTTTTTAACATCCTTAACGAGTTAAATGACTATGCAGGACAGCGAGAAGTAGTAGCAGAAGAAATGGCCCACAGAGTTTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
NA
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCCA
R:
TTTCTTTCAGTTTTCAGATCATGAGC
Band lengths:
198-1477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]