HsaINT0065329 @ hg38
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93522082-93523491:+
Coord C1 exon
chr1:93522082-93522135
Coord A exon
chr1:93522136-93523343
Coord C2 exon
chr1:93523344-93523491
Length
1208 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
TTTTGAAATGTTTTTGCCAGGTT
3' ss Score
6.6
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGCCCCAAACGTTCATCCAAAGATGAAGAGCCACG
Seq A exon
GTAAATTACATACCTGTTCATTAATGCATATTAAAAAATTTAAAAATACTTATATTTTTATTATTTAGTAAGATATATTCTTAGCTTTTTATAAAGATTTTATAAAGTTTAATTTAAAAATTAATGTTTATGAAAGAAGGAACTACTGTTTATCTTTTATGAGGATAAATACTGTAGTGGGCTTGATCAACAGTTTTCTAGAATAGTCAGATACAGATTTTCAATTAAAATGTAGACTAGGACTCCACTTGAATGATTTAGTCTGCAGAAGAAAAGGATATTTTTCATACTTGGTTGTGTAGTTGTTGGCTTCGTAGATTCTTGCTTTTACTCTTATAGATAGTAAAACAATTTGACTGATTGGTATAAAGGGATGTTGAAAAGCACTGAGAGTTTTTGCATTAGAAATAAATTAAAAGGTTAGAAATCACTTATGAGTTTTTTTGTGGTCTTAAAGAGGAATATGTGGATGACTGTTTAGATGGAGAAACAAGAGGAGACTCGACTTAAACAAACAACTCTGTATATAATTGTCAGTTGTTAGGATTCTCAGGTTTAGTGTTAATGGAGTCCTATCTGAGCTGTTAATCTTCATCTGTAAGAGAGTGTTCCGCAGTATGTTCAAAGTAGATATATACATTAATACAGTGATTCTCTTTGTTTCTCTCCTTCCCTCACACACGTTTTTACCCTTATTTTTGACCCTTTACCCGCTTTGGTGTCAACTATAATGGCACTTCACTTCCATTCAGGATATGGGCAGGCATACAGGCAGCTGTGTCCAGAGCTGATAGCAAAATTGTTCTGTAGATCAGCCATCGAGATGCATTTGGCAAGCACATCATCTCTGCAACAGGTTCAGCTACCAAGCCTAGGAATCCAACCAAGTTCATTCCCAAGCTCAGGCCAGTCAGTTGGCAACTTAAGAGATTCCAGTATGCCAAAAGAGCCTGCAGGTAGTATTCTTATTATTTTTTGACCCCAAATATCCCTTTACTAATAAATGAAAGACTACTTGAAGATATACAAACATGTATGACTTGAGCTTAATGCAGGATTTTTTTCCATATGAAGTTAATTTAGAACTAGTAGCTGAGATTTAGGTTGAATATGCTAAAATTTGCGAAATGTTAGATTCAGTCCATACCTCACCAACATTTGTAATGAAAATAAAAGTAAGTCTCACCATTTTGAAATGTTTTTGCCAG
Seq C2 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942:ENST00000370253:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
NA
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGCCCC
R:
TTTCTTTCAGTTTTCAGATCATGAGC
Band lengths:
198-1406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development