GgaINT0035265 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12830420-12832115:-
Coord C1 exon
chr8:12832062-12832115
Coord A exon
chr8:12830568-12832061
Coord C2 exon
chr8:12830420-12830567
Length
1494 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GTGTATGTGCTCTCTGTCAGGTT
3' ss Score
9.59
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCTAAACGTTCATCCAAAGATGAGGAACCCAG
Seq A exon
GTAAAAATGTGCACTTAAAGTTCTGTGTATAAGAAATAAGGGCTGCTGTGTACTTTGTCCAGTTTTGAATTTTTATTTCTTCTAAGATAAAATACTTAAATGTGTAAGACAACAAAAGCTGCTTGGCTTCTCAGGTCTGATGTAATACTTAACCATGGCACATCATATTTGTTTCTGTAGTATTTTAAAATAGTAAACGTGGCAGGTTGTACTTGCTGTGTTCCAAATTAATCTTTATCTCACTGAAAGCTTGAAAGCAGAAGTTTGTTCTAGGGTTTTTGTTGTTGTTTGGTTTGGTTTTTTAATAGAAGAGCGACGATTTACCTCTGGGCTGTGGTTTTTCTTAGCATAGTTGGCTTTCCTGCAGCATAGTTAGGTGTTCAGATCTGAGACTTGGGTGTAAATGAAAGTGCCTTGACCTTGGCAAGAAGAGCTCGTGCCTCTTAAGCTTGCTGTCCTTCTCTGACTCCAGAGACAAAATAAGTCTGAATGATAAATAATCATAAAGTTGTTTAGCATAAACTGCTCTTCTACAGTTACACAAAGAGAGGTGCTTGTTCTGCGGTCCCTATCTATTACCTCTTTTATTTAGAGAAGTGTAATACATTGTTTCCTTCAGAGATAAACATGAGTGAAAGAATGTGGGCTAAGTTTCAGATTGTGACCAGAGCACACCCTGTATGCAGAATACCTGGAAATCCACACTGGGATTTCCTCTCTTTTGTCTCTGTTTAAAGATCCTGGGGTACAGGGAACAGGAATTCTAGTTCTAGGGTGGCATTTAAATTGCACAAAGCCAAGCCTATGGAGATGGCGGTATTCCACAGTTAAAGAGAGAAAGATGTATATTTTAATGTGGTGCCTGTTGTTTTTTCTTTCTTCCCTTCCACACACACTTTCTACCCCTTTGCCCCTCCTCTTCCCCCCTTTTTAGTGCCAGCCATAGTGGCACCTTACTTCCAGCCAAGAGGTGGGCAGGCATACAGGCAGCTGTCTTCAGAGCTGATAGCAAGCTTGTTCTGTAGATCATCCATCGGGATGCATATGAGTGGTATGATTGGCATGTTCCACCCTCAAGACTACCAAGTACATCATCTCTGCAACAAGTTCAGCCTCCAAGCCTAGGGACGTATGTATCCGTTCCCAAGCTCAGGCCTCTCAGTTGGCAGCTTAGGAGATACCACTATACTACAGGGCTTTCCAGGTAGTATTCTTCTTCTTTCTTTTCCATCCACAAAAATCTATGTTCTTATTAAATGTATTTGAAGAGACGTTGCAACAAATAGTACATGCTAGGCTCAATGTAGGCTTTCCCAAGCTTCATTTGTTGTAATTCAATCAGCGTTAAAACAGGGTTTACTGTAAAATATATCTGGTGTTTCTTTTTAATTAGGAGCACAAACTGTTAACAGAAATCTATATAAAAAAAGAAGCAAACGCATAACTGTCTCACTTCTTGTATTTGTCTGTTTGTGTGTATGTGCTCTCTGTCAG
Seq C2 exon
GTTTACTTCATGTATTGCCTTTTTTAACATCCTTAACGAGCTGAATGACTATGCAGGACAACGTGAAGTAGTTGCAGAAGAAATGGGACACAGAGTCTATGGAGAATTAATGAGATACTCACATGATCTAAAAACTGAGAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.6=100)
A:
NA
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTAAGAAGTACTGTCCTAAACGT
R:
TCTCTCAGTTTTTAGATCATGTGAGT
Band lengths:
191-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]