RnoINT0061839 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226719307-226720544:-
Coord C1 exon
chr2:226720491-226720544
Coord A exon
chr2:226719455-226720490
Coord C2 exon
chr2:226719307-226719454
Length
1036 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTTTTAATATGTTTTGCCAGGTT
3' ss Score
8.6
Exon sequences
Seq C1 exon
AAATTTGGTTAAGAAGTACTGTCCCAAACGCTCGTCCAAAGATGAAGAGCCAAG
Seq A exon
GTAAATCTACCTGTTGTCATTGCACGCCAACGGTGTTCAGGACACCACATGTACACTTCATTACTTTGTAAAATAGACTGTCATAATCTCATTAAGTTTTCTTTAAAGTTTCAATAAAAAAATCACGATATTTATAAAAAAGAAGAAACTACTATTTATCTTTTGAGGACAGATAATTTAATAAACTTAATAGATTTTGCTTTTCAGGATAATGAAAAATGATGAAATTTGGGGAATAATTTTTGAATCCTGAATAAAAGATGAGAAATTTCTTTTTGGAGATATTAATATGCAGGTGGTTGTAAACTGTAGAAATTAAATGAGATTAAATTCAAAGCTTTTTGTATATGTTATTGGTTCTTAGCATTCTTATGGGAGCCAGCTCTGTCTGTGCCCTCAGTTTAAGAGTGTTCCTTGGTGTGTTCCAAGTAGATATATACATTTTAACACAGTAATTTTCTTTGTTTCTCTCCTTCCCTTCACACACATTTTTACCCTTATTTTTGCCCCCTTTATCCCTCTTTGGTGCCAACCATAATGGTACATTTCCATTCAGGATGTGGGCAGGCATACAGGCAGCTGTATCCAGAGCTGATAGCAAAGTTCTGTAGCTCCGCTATCAAGATGCACTTGAGTGGTATGATTGGCAGGTTCTGTCCTCGAGAACAAGCACATCATCTCTGCAACAGGTTCAGCTCCAAGCCTAGGAATCCACCCAAGTGATTCCCAAGCTCAGGCCAGTCAGTTGGCAACCTAAAGAGTCCACTATGTCCAAAGAGCCTGCAGGTAGTATTCTTATTGTATTTTGACCCCAAATATCCTGTTATTATAAATTAAAGGCTATGTAAAGATCCTTAAACATGTTCAACTTGAGCTTAATGCAGGTTTTTCCCCATACGTAGTTAATTTAGAACCAGTAGCTGGGATTAGGTTGAGTATATTAAAGCTTACCAACCTTTAGACACCAAAATTATCTCACCAAAAAATTGTAATGGAAGCAAAAGTAAATCTCATTATTTTTAATATGTTTTGCCAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCACACAGAGTATATGGTGAACTAATGAGATATGCCCATGACCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(19.4=100)
A:
NA
C2:
PF0061118=FCH=PD(30.1=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTTGGTTAAGAAGTACTGTCCCA
R:
TTTCTTTCCGTTTTCAGGTCATGG
Band lengths:
198-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]