MmuINT0065317 @ mm9
Intron Retention
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122272513-122273862:-
Coord C1 exon
chr3:122273809-122273862
Coord A exon
chr3:122272661-122273808
Coord C2 exon
chr3:122272513-122272660
Length
1148 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTTTAATATGTTTTGTCAGGTT
3' ss Score
8.56
Exon sequences
Seq C1 exon
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAG
Seq A exon
GTAAAGCTAATCTGTTAGCTATTGCACATTAACAGTATTCAGGACATCATATATAAACTTTTACTTTGTAAAATATACTAAATAATCTCATTAAGTTTTTCTTTAAAGTTGTTTTAATAAAAACATCACTATTTATAAAAAAAAGAAGCTACTATTTATCTTTTGAGGGTAGATAATTTAATGAACTCAATCAATAGGTTTTTCTTTTTAAAAAATAAATGAAAGTGGGATTTTTAAGTAAAATTTAGACCAGGATTTGGCTTGCCTTGTTTATTCTCCAGCAGAAAGGTGTTTTCCCACACTTCATTTCAGGATAATGAGAAGTGATGAAATTAGGGGAATAATTTTTGAATCCTGAATAAAAGAAGAGATTGGGGGGGACTTTTTGGAGATCTTAATATGCAGGTGGTTGTAAACTGTAGAAATTAAATGAGATTAAATTCAACAGCTTTTTGTATATGTTATTGCTTCTTAGCATTCTTAAGAGAGCCAGCCCTGTCTGAGCCCTCAGTTTAAGAGTGTTCCTTGGTGTGTTCCAAGTAGATGTATACATTTTAACACAGTAATTTTCTTTGTCTCTCTCCTTCCCTTCACACACATTTTTACCCTTATTTTTGCCCCCTTTATCCCTCTTTGGTGCCAACCATAATGGTACATTTCCATTCAGGATGTGGGCAGGCATACAGGCAGCTGTATCCAGAGCTGATAGCAAAGTTCTGTAGATCAGCTATCAAGATGCATTTGAGTGGTATGATTGGCAGGTTCTGTCCTCGAGAACAAGCGCACCATCTCTGCAACAGGCTCAGCTGCCAAGCCTAGGAATCCACCCAGTGATTCCCAAGCTAAGGCCAGTCAGTTGGCAACCTAAAGATTCCACTATGTCAAAAGAGCCTGCAGGTAGTATTCTTACTATATTTTGACCCCAAATACCCCTTTATTTATAAATTAAAGGCTATGTAAAGATACTTAAATATGTCCAACTTGAGCTTAATGCAGGTTTTCTTTGCATACGTAGTTAATATAGAACCAGTAGCTGGGATTAGGTTGAGCATATTAAGCTTATCAACATCCAGACACCAAAAAAACCTCACCAAAAAAATGGTAATGGAGCAAAAATAAATCTCATCATTTTTAATATGTTTTGTCAG
Seq C2 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-Fnbp1l:NM_153118:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(22.8=100),PF115563=EBA-175_VI=FE(33.3=100)
A:
NA
C2:
PF0061118=FCH=PD(30.4=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCTGGTTAAGAAGTACTGTCCCA
R:
TTTCTTTCCGTTTTCAGATCATGGG
Band lengths:
198-1346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: