BtaINT0063361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50124097-50124972:-
Coord C1 exon
chr3:50124825-50124972
Coord A exon
chr3:50124160-50124824
Coord C2 exon
chr3:50124097-50124159
Length
665 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTGGTTGTTATCACCTTTAGCAT
3' ss Score
6
Exon sequences
Seq C1 exon
GTTTACTTCGTGTATAGCCTTTTTTAACATCCTTAACGAGTTAAATGACTATGCAGGACAGCGAGAAGTAGTAGCAGAAGAAATGGCCCACAGAGTTTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
Seq A exon
GTAATTTTCTTGTCATTTTTATACAGTTATAATAGCATATAATGTTTTCACAGAAATGAAGTAATTACTTTGCCTTTTAAAATTATGTATGTTCATTCAGCATGAACTGGTTTTCTATTTCACTACATTTCTTCTAGCTTAAATTATCTCAAGACATTCTTGCTAATTTGTGATCATTTTGGATTTAAGACTGAGGTTTGGTAAACTCTAGCCAGCATGCCAACTCTAGCTTACTGCCTGTTTTTGTTTCCTAGTTAGCATGAGCTCAGAATGGTTTTTACATTTTTAGATAGTTACTTACATATTGCGGGTGGCCACTTTTGCATTACATTAGCAGAGTTGAATATTTGCAAGAGACCACGTGGTTTCCGACACCTAAAATATTTATCTGACCCATTATAAAAAACTTTTTCTACCCCTATTCTCTATAATCATGTATTTTTCTAGAGATTATATGTCTTAAAAATTATATTTGAAGTATTTAAATAATATTCTAGGAAATGCATTTTAGAGAGTTTTTGTCTTCCTGAGTCTTGATAAAGTTAGATAATTAGGACCTTGAAAGTAAATTAAGTGAAAAGTCTTTTGGGAGAGGCCTTTAGACTTTAATTGGTGTTTAAATGTAATTTTAAAATTTGTGTTTTTTTGGTTGTTATCACCTTTAG
Seq C2 exon
CATCTTCAAGAGGGACGAAAAGCTCAGCAATACCTCGACATGTGTTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.1=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTAACGAGTTAAATGACTATGCA
R:
ATTATCCATCTGTTTCCAACACATGT
Band lengths:
182-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]