MmuINT0065318 @ mm9
Intron Retention
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122271671-122272660:-
Coord C1 exon
chr3:122272513-122272660
Coord A exon
chr3:122271734-122272512
Coord C2 exon
chr3:122271671-122271733
Length
779 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATA
5' ss Score
5.05
3' ss Seq
CTGATGGTTATAATCTTCAGCAT
3' ss Score
3.6
Exon sequences
Seq C1 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATG
Seq A exon
GTAATATTTATGATTTTCATCTAATTACAACAGTCTTATGAAATAGTTTCAGAAAATAATTATTTTTCTTTTTAGAACTAAATGTTCAGTTTAAAACTGGTTATCTATATTACTAAATTTCCTTGATTAAAAATCGTGAGATGAGAATATGCTGCGAAAAAAATTTTCAGTAAAGAAAAACTGTGAGATATGGTTATCAGTTTATAATCTGAATTTAAGATCAGAATTTGGCAACATTGCAGCCCACAGACCAAGTACAGCCTATCACTTACTTTTGTTTCCTAGGTCCCATAAATTAAGAATACTTCATATATTTAGGTCGTTGAAAAAGAATTAACAAGTAAAGATTCTGTGGCATATAAAATTTTATAAAATTCGAATTTGAGTGTCCATAGAGTCGGATTTAGTCTGCATTCATTGCTAAGGCTACACAGTTGTCGACAGTGCTGTTTGCTGTGCAAGCCTAAAATATGTGATGCTTGTTAGCCGACTTTCTATAGAAGAGTGAGTTCTGTGAAGATGATCATTATTTTCTTTAACATTATGCCTGTTTTAAAGGTTATTTTAAAAGCATTAAAGTAACCTATAAGATGTATTTTAAATAAATTTTTTTACTTTCTTTGTAACTCTAAAGATGCATAACTATATATACATGTCTATATTTTATCACCTTAATAAAAGTTAAGAGCCTTTTGAGGATGGTGGAATTCCCTTTGTATATAAATGTAATTATTTTTGTTTGTTTGTTCTGTTTGTTTGCTGATGGTTATAATCTTCAG
Seq C2 exon
CATCTCCAAGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735-Fnbp1l:NM_153118:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.4=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTAATGAGTTAAACGACTATGCA
R:
ATTATCCATCTGTTTCCAACACATGT
Band lengths:
182-961
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: