RnoINT0061840 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226718470-226719454:-
Coord C1 exon
chr2:226719307-226719454
Coord A exon
chr2:226718533-226719306
Coord C2 exon
chr2:226718470-226718532
Length
774 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATA
5' ss Score
5.05
3' ss Seq
CTGATGGATACAAACTTCAGCAT
3' ss Score
-0.62
Exon sequences
Seq C1 exon
GTTTACTTCATGTATCGCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGGCACACAGAGTATATGGTGAACTAATGAGATATGCCCATGACCTGAAAACGGAAAGAAAAATG
Seq A exon
GTAATATCTATAATTTTTATCTAATTACAACAGTCTTACGAAATGGTTTCAGAAAATAATTATATTTCTTTTTAGAACTAAAACTGGTTTTAAAACTAGTTTTTATATTACTAAATTTCCTTTAGTTAAAAATTGTAAGATGAGAATATACTGTGAAAAATACTTTCAGGAAAACAGAAAAACTAAGATATGGTTACCACTTTATAATCTGAATTTAAGAGTTTGGCAACATACAGTCCACAGACCAAATACAGCCTATCACTTATTTTTGTTTTCTAGAGCCTATAACTAACAATACTTGATATATTTAGGTGATTGAAAAAGAATTAAAACGTAAATATTCTGTGACATGTAGAATTTTATAAAACTTGAATTTCAGTGTCCATAAAATTTAGTTTGCATTCATTGAGTGTGATATTTCCTATGGCTACTTTTGTATTGTGTAGACTGAACACTGTTTGGCTTGCAAACCTAAAATATGTATTACTTGTTACCTGACTTTTAATAGAAAAGTCCTATGAGGATGATCATTATTTTCTTTAATAGTATGCCTGTTTTAAAGGTTATTTAAAAAGTATTAAAGTAACCTATAAGATGTATTTTAAGTAAGTTTTTTACTCTCTTCCTAAGTCTAAAGATCCATAATTACATATGCATATATATATTTTATCACTTTGAAAATAAAGTTAAGAGCTTTTGAGGCTGTTGGAATTTTCTTAGTATGTAAATGTAATTATTTTTGTTTGTTCATTTGCTGATGGATACAAACTTCAG
Seq C2 exon
CATCTTCAAGAAGGACGAAAAGCTCAACAATACCTAGACATGTGTTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.1=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTAATGAGTTAAACGACTATGCA
R:
ATTATCCATCTGTTTCCAACACATGT
Band lengths:
182-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]