DreINT0069253 @ danRer10
Intron Retention
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15018811-15019101:+
Coord C1 exon
chr8:15018811-15018958
Coord A exon
chr8:15018959-15019038
Coord C2 exon
chr8:15019039-15019101
Length
80 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
CTTGTGTGTGTGATCAACAGCAT
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTTCACGTCTTGTCTGTCATTCTACGCCATCCTGAATGAGCTGAATGACTATGCTGGTCAGCGAGAGGTTGTTGCAGAGGAGATGGGCCACAAAGTGTATGGAGAGCTCATGAGATACTCACAAGACCTGAAGGGAGAGAGGAAACAT
Seq A exon
GTGAGTGCCCGAAATACACCCCTGGGGCATGCTGGTGCAGGACAAGACTATAATAATGTGCTTGTGTGTGTGATCAACAG
Seq C2 exon
CATCTTCAGGAGGGACGGAAGGCCCAGCAGTATCTAGACCAGTGCTGGAAACACATGGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131:ENSDART00000045038:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.4=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGCCATCCTGAATGAGCTG
R:
TGGTCTAGATACTGCTGGGCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]