HsaINT0065330 @ hg19
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:93988901-93989880:+
Coord C1 exon
chr1:93988901-93989048
Coord A exon
chr1:93989049-93989817
Coord C2 exon
chr1:93989818-93989880
Length
769 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
GCCGTGGTTATAATCTTCAGCAT
3' ss Score
4.25
Exon sequences
Seq C1 exon
GTTTACCTCGTGTGTAGCCTTTTTTAATATCCTTAATGAGTTAAATGACTATGCAGGACAGCGAGAAGTTGTAGCAGAAGAAATGGCGCACAGAGTGTATGGTGAATTAATGAGATATGCTCATGATCTGAAAACTGAAAGAAAAATG
Seq A exon
GTAATTCTTACAATTTTCATCCAATTGCAATAGTATATGAAATAGTCACACAGAAACACTTTGTTTTCTTTAAAATGTGTGTTCAGCATAAACTGGTTTTTCTATTTCACTACATTTCTTCTAGCTAAAAATTATCACAAAATACTCTTGCTAATTTATGATCCTTTTGGATTTAAGTTTGGCAAACTACAGCCTATGGGCCAGACCCAACCAACTGCTTGGTTTTGTTTGCTAGTTGCCACAGGCTAAGAATGATTTTTATATTTTTAGATGGTTGAAAAAAGAATAATATTTCATGACATTGACAATTATATGAAATTTTATTTTTAATGTCCATACATAAAATTTTATTGGAACAGACCCACATTCATTGACTTTTATATTGCCTGTGGCTGCTTTTGCATCACACTAGCAGAGTTGAGTGTCACAGAGACTGTGTGGCTTAAAAAGCCTGCAATATTTATCTGACCTTGTATAAAAAATGTTTGTCATCTACTATTCAAGACAATCATTATTTTTCTGGAAATTGTATCTGTTTTCAAGGTTATATGTAAAGTGTTAAGACAATATCCTATAAAATGCATTTTTAGGAAGTTTTGCATTACTTTCTTCCTAAGTCTTGGTAAAGTTATATAATTAGTACCTTGAAAAAAATAAAGTGAAAAGCCTTTTGGGGACTTTAGACTTTAGTGTTTAAATGTAATTATTTTTATTTGTTTTTGTTTTATTTTTTATTTTTATTTTTTTTGGCCGTGGTTATAATCTTCAG
Seq C2 exon
CATCTGCAAGAAGGACGAAAAGCTCAACAATATCTTGACATGTGCTGGAAACAGATGGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-FNBP1L:NM_001024948:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.1=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTACCTCGTGTGTAGCCTT
R:
TCCATCTGTTTCCAGCACATGT
Band lengths:
207-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)