GgaINT0035266 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12829964-12830567:-
Coord C1 exon
chr8:12830420-12830567
Coord A exon
chr8:12830027-12830419
Coord C2 exon
chr8:12829964-12830026
Length
393 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
CTTATTTGTGGCAATTTTAGCAT
3' ss Score
4.77
Exon sequences
Seq C1 exon
GTTTACTTCATGTATTGCCTTTTTTAACATCCTTAACGAGCTGAATGACTATGCAGGACAACGTGAAGTAGTTGCAGAAGAAATGGGACACAGAGTCTATGGAGAATTAATGAGATACTCACATGATCTAAAAACTGAGAGAAAAATG
Seq A exon
GTAATTTCTATATCTTGATTTTATAATGGGATATGAAATCAGACATGCCTCTGAATGAACTGATGTATTTGTTTACCCCATTTCATGAATTTGGCAATAAGTAGGTTTTGTAATACATTTATAGAATACATGTTTAAAGCTGTCGTGGTATTATTATGTACTGTTAACAGTTACTAAGACCTGAGGATGAAGATCTTGGAAGACTGCTTACTGGTAGCTTTTTTGCCAATATAATTTTTTTTGTGTGGTACTGTTTTTGCATATAGTAATGTCTTTAAAAGAGTACTGGTAATGTGCTAGAAGCGTGTAACATAGTGTGTCAACAGAGCACAAAGTAGGTAATGGTAATAGTACTGAATATATGTAAATCAAACTTATTTGTGGCAATTTTAG
Seq C2 exon
CATCTTCAGGAAGGACGAAAGGCTCAACAGTATCTGGACATGTGCTGGAAACAGATGGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.290
Domain overlap (PFAM):
C1:
PF0061118=FCH=PD(30.4=56.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTAACATCCTTAACGAGCTGAA
R:
GTTATCCATCTGTTTCCAGCACA
Band lengths:
191-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]