BtaINT0064751 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016253 | G6PC3
Description
Bos taurus glucose 6 phosphatase, catalytic, 3 (G6PC3), mRNA. [Source:RefSeq mRNA;Acc:NM_183364]
Coordinates
chr19:44531725-44534443:+
Coord C1 exon
chr19:44531725-44531983
Coord A exon
chr19:44531984-44534336
Coord C2 exon
chr19:44534337-44534443
Length
2353 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TGGCATCTGCTCTTTTCTAGGTT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCCTTGCATCAAACCCTGGCCGGACCAGCCCGGGAGTCGCCATGGAGTCCACGCTGGGCGCGGGCATCGCGATGGCCGAGGCGCTGCAGAACCAGCTGCCCTGGTTGGAGAACGTGTGGCTCTGGGTCACCTTTCTGGGGGACCCCAAGAGCCTCTTTCTGTTCTACTTCCCCGCGGCCTACTATGCGTCTCGCCGGGTGGGCATTGCGGTGCTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCGTCTTCAAGTG
Seq A exon
GTGAGACAGCGAAGCCCTCCGGCGGCCTGGCCGCCCACCGCCAAGGGCCCTGAGCCTTGTGCAGACCCTGATTCCTCTCAGAAATTGCCTCAAAGGCCTGGCTCCCCCCTCCACCCCTACCTCCACTCCTACCCCCACCCCCAGGGAACCTTAAGACCTCCCCACCCCTACCCCATGGCCACTGACTTTTCCTCTTTGAGCATCTTTGTGCATCTTGAACTCAGACCTCAGAGTCCCCGTCCTAATCATTAGACTAGTGTTTAACGGGCCTGATCAGATAAATCACTTAAGGGGGCGTGTTTAAAATGCAAATATCCCATCCCATCCCAGACACACTGATTTTGAAACTCCAGGGGAGAGCCTGGGAATCTGTATTTTTAAAAAACATCAATGGTGACTTAAGTAGCAGAAAGTCCTGCTTCTCAACTCACTCTTTAATTCATTTCTTCATTCATTTATTTGATAGGGTTTTTAAGAAGCTTGCTTTGTGCCAGCTTCAACACTGGCTTTTCAGGACAGAAAAGGCTTCCAAGTTAAGGTGTGGTCACCAGGCCATGGCCATCAACATAAGGAGCATTTGAAAACTTGCTAGAAATGCAGAATCTCAGGCTCTAGGTGGGAGCTCCTGAATCATTATCTACATTTTAGCAAGGACCCCAAGTGGTTCGTGTGCACAGTAAATTTCAAAAAGCACTGGGGCTAAAGCTTTGCCTTTTAGGGAACACTTTCTCTTCTCGCTTTTCACCTTCATTCACTAGTAGGCTCTGACACAGACTCAGGCAAGTGGGTAGGGCCCTTGGGGCTTATCTGTTTGTGCCACCTGTTCTCTTGGGTGCAGAAGGGAGCTATACTTCCCACTGGGCGTGCAACTGCACCTCTCCTCACCTCACCATCTATTGCCATATTGCCAGCCTGGGGGAGGGAAGGGGGTTTCATAGGAGACACTTGAATGGGCTAGAATGACTTGGTGAAAAACCAAATACCTTCCCTTCCACTTCTCTCTACCAGGCCTTCATCCCTACTATAAACGGTAAAGCAGTTGTCTAATCATTTCCTTCCTACTGAGTTGCCCTTTGCTTTGTGCTGTTCTCCCTCAGAGTCTGTATCAGCCTTCCCGTCTCATCCTGTTCCCCTAAGACCATTGATTCCCACATGGCAAAGCCCCGATTAATTTCCTAAGTATGTGTTGAGCATCTGGTGTGTGAACCAGACTCAGTTTTTGGCGGGGAGAGGCAGGTCCCTTTCCCAGCCCTTGGCTTCCTGGTCAGCATCTCTGCTGTTCTCCCAACCTTTTCTCTTTCTGGCCACAGCAGCCTCTTAGTCTGCTGTGTGTTTTCCAGGGTCCAGCGAAGCACCTAGCTAAGCCAGGGGATTTAAAACTGTTTTGTCTTCTTTATTTTCCCTCAGCTTCCCTGTGCATTCCTTGCCTCCATTTTTTTTTTTTTAAATAGAAGGACTTTATTTATTATTTTGGCGGGCACTGGGTCTTCATTGTGGCAGGGGGCTCTTAATTGTGGTGCATGGGCTTTCTCTAGTTAAGGTACATGGGCTTCTCCTTGGGGGATGCTCAGGCTTCTTTTGCTGCGGCACGTGGGTTCAGTGACTGCAGCACATGGGCTTTGGCCCTGCAGCATGTGGGATCTTAATTCCCCAACCAGGCATCAGACCCACATCCCCTGTGTTGGAAGGCGGATTCTTAACCACTGAAGCACCAGGGAAGTCCCGCCCCGTTTTCTTATATTTGTTTTATTTCTTAGTTGGCTGTGTCAGGTCCTAGTTGTGGCACATAGTATCTTTAGTTGCAGCACGCACACTGTTCGTTGCAGAAGGGGATTCTAGTTCCCTAACCAGGAATCATACCTGGACCCCCTGCATTGGGTGTGTAGAGTCTTAGCCCCTAGACCACCGGGGAAGCCCCGCCCCCACTACCATTTTCAAGCATGAGAGACTTTCCTAAGTAACTGAGGCTGGAATTTGGGAAATGGAGAACAGAGAAGCAGCAGAGTGAGGGTCTGGGAAGGAGAGGGAGACTCAGGTCCCGGGCTGTCTGTAAATGACAAGAACAGAGCTGGCCTTGCAGTGGGAGGGATAAGAATGGGACTTTTGAGCATCTCAGAGCACGCCCACACACACCACAATCTCTTGTCTCCTTACCACTTTTTAAAAAAATGCACACTTTCTCCTGTTCCAAGGTAAAAAACCGTGGCAAGGCAGTGACCCAAAATCAGATGTCCTCTCTGACTCCACCCTATAAGCCCTTCGGAGTATTCCAGGTGTCCATCTGCCTCACCCCCATTCCCCTGGCCTTTGTGTGTCTGTGTGTGTGTGTGTAATGGCATCTGCTCTTTTCTAG
Seq C2 exon
GTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTCCATGAGTCTGGGTACTACAGCCAAGCTCCAGCCCAGGTTCACCAATTCCCCTCTTCTTGTGAAACTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016253:ENSBTAT00000021621:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(22.2=47.9)
A:
NA
C2:
PF0156916=PAP2=FE(22.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development