RnoINT0063272 @ rn6
Intron Retention
Gene
ENSRNOG00000020902 | G6pc3
Description
glucose 6 phosphatase catalytic subunit 3 [Source:RGD Symbol;Acc:727875]
Coordinates
chr10:90134193-90136470:+
Coord C1 exon
chr10:90134193-90134582
Coord A exon
chr10:90134583-90136363
Coord C2 exon
chr10:90136364-90136470
Length
1781 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TTGTATCTTGTCTCTTCCAGGTT
3' ss Score
12.36
Exon sequences
Seq C1 exon
GGGCGGGGCAGGGCGGGGGTGGGACTTGGCTTAGACCCTTGGCGGGGAGGGCAGGGCTGGGGATTAGAAAGGGTGGGCTTTAGAAGACTAGCAGGTAGCCGCTTCATTTCTCCTAAGGTTCCTCGACTTGCTCCCTATAACCAGCTCCAGCCTGGAGGATTCCTGACTCGCCATGGAGTCCACTCTGAGCGCCGGCATCATGATGGCTGAAGCACTACAAAACCAGCTTCCCGGGCTAGAGAATATGTGGCTCTGGGTCACCTTTCTGGCCGATCCCAAGAACCTCTTTCAGTTCTACTTCCCCGCGGTCTACTACGCCTCCCGCCGCCTGGGCATCTCCCTGTTCTGGATCGCCTTCATTACTGAGTGGCTCAACCTCGTCTTCAAGTG
Seq A exon
GTGAGACAGAGAACCCTTCGGGCATCCTGGTCCCCTATCCCTTTGGGGCCCTAATCTCCCTCAAGTAGGTACCTCAAAGGCAATGCTACCTACTCTTAAACCTTTAGGCCTGAATCTTCACCTTGAGTTTCTTTGTATCTTGGCCACAGACCTCACACTTCAACTGTCCCAATCAGAGAAATGACTTAAGGGGCGTGTTCAACTGCAAATACAGTTTCCTACTTATTTCCTCAGACCTACTTATTTCATAACTCCAAATTTAGTTGTAGTTGGAAATCTGTATTTAAGCAATTATTGAGAAATTTAGATAGCCAAAAATCTTTCTTAGCTGAACATTTCATCCATCCACCCATCCATCCATCCATTTGTTTGACATTAAGCTAGGCACCAGTTTAATTAAGATGTGGTCCCTGGTTTGGACTCAGAAGCCTAGGCAATGCTTGAAGACTTACTAGAATACAGAATCTCAGGCTCCAGATCGGATATGCCTTTGAGCAAAGCCCCCTGGTTACAATGTGCCTAGTGAAGTCTAAAAGACACTAAAGGGAATCCTTGCCCTCCCTGCAAGGAACATTTCCCTTCTCTTCCCAGTAGTTAGTATAGCTTTCTCATTCTAAGAAGCCAGGGATCCCACATTACTGGGCCTCCTGCAGCCCTTGGTGTTTATCTGTGTCACAGTGTTTGTTTGTTTTTCTGTATGGAGGGGAGTTACTCCACATTGCCGTTGCCCAGACCCCAGCCTTGAAGTAGGAAGCAAGGTTCATAAAGTGACACAGAGTAGGCTAGAAGTCCCTCTCCCTCCCGCCCTTCTCAAGGGCTTGTAAACCTAAAGGCAGTTGTCTAATCATTTCCTCCAGGCCTAACGGCCCCTATCCTATGTGCTGTCTCCTCCCTCGGAGTCTGGATAAGCCCGTGCTTAATATCCAAGTAACAAAGCCTCAAATTGTTCTCTTCCTCCTTCACTAAGAGAAAGTCTCACACTCCAACCCAGAATGGTGGTCCTCCTGCCTGTCTTCCCAGCGCTGGGATGACAGGTGTACACTAGCATGCCTGAGCCCGTATTCACTTTATAGCTTTGTGGTCAGCACTTTGCTTCCTGCTCTCCCATCTTGACTCTTTCTGGTCACAGCAGCCTCTTTGTGGAGTTTTTCCAGAGGCTAGACAAGCACCTGCTAGGCCAGGGGAGTTGGATTTTTCCCCCCCTTATTCTTTCTCAGGCTCCTCTGTGCATGCCCTCCTCTCAGTTTCACACTCGAAACTCACCCTGTAGAATTCAGGAGTGGCTAATTCAGGCTGGGACCGGGAAACAGAACTGGGACAGGGATAGGTAGAGAAGTCAGGGAACCGGGGCCTGAAAACAGCCAGCTGGGTAATGGGAGGGATAAGAGTGGGACCCATGTCTCAAAGCACTTGTATACCTCTACCCAGTCAGTGTCGGTGACTGTCTGTCTGTCTAGGTCTCCCTCTCCAATCTTTGGCCTCCACATCACTTTAAAAGGAAAAACATGTGCTTCTTTGCATTCCAAAGTTTTAAAAAAAAATCACAGTAAAGTAATAGCTAGAATCAGAGTGCCCTTCTGAGGGCACCAAGCAGACCCCCCAGACTCGGTCCATCCCCTCTATATCCCCATATGTTTTTTTTTTCTTTTCTTTTCTTTTTTTTTTTTTCTTCTTTTTCAGAGCTGGGAACCAAACCCAGGGCCTTGTGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCTAAATGTTATATGGTCTTGTATCTTGTCTCTTCCAG
Seq C2 exon
GTTTCTGTTTGGAGACAGGCCCTTCTGGTGGGTGCATGAATCCGGGTACTCCGCCCAGACTCCAGTCCAGATTCACCAGTTCCCTTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020902:ENSRNOT00000028375:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(16.3=32.9)
A:
NA
C2:
PF0156916=PAP2=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTAGCCGCTTCATTTCT
R:
GAGTACCCGGATTCATGCACC
Band lengths:
351-2132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]