MmuINT0066816 @ mm9
Intron Retention
Gene
ENSMUSG00000034793 | G6pc3
Description
glucose 6 phosphatase, catalytic, 3 [Source:MGI Symbol;Acc:MGI:1915651]
Coordinates
chr11:102051013-102053455:+
Coord C1 exon
chr11:102051013-102051457
Coord A exon
chr11:102051458-102053348
Coord C2 exon
chr11:102053349-102053455
Length
1891 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TTGTATCTTGTCTCTTCCAGGTT
3' ss Score
12.36
Exon sequences
Seq C1 exon
GCCGGAGGAAACAGTACCAGCTACGGCTCCAACTCGCGCGTGTCAGGGACTGCGGGGGCGGGGCGGGGCGGGGGTGGGGCTTGGTTTAGACCCCCGGCGGGTAGGGCGGGGCCGGGGGCTAGAAAGGGTGGGCTCTAGAGGGCCAGCAGGTAGCCGCTTCATTTCTGCTAAGGTTCCTCGACTTGCACCCTACAACGGGCTCCAGGCTAGAGGACTCCTGATTCACCATGGAGTCCACGCTGAGCGCGGGCATCATAATGGCTGAAGCACTACAGAACCGGCTTCCCGGGCTAGAGAATATGTGGCTCTGGGTCACCTTTCTGGGCGATCCTAAGAATCTTTTTCAGTTCTGCTTCCCCGCGGCCTACTACGCCTCCCGCCGCCTGGGCATCTCCGTGCTCTGGATCACCTTCATTGCTGAGTGGCTCAACCTTGTCTTCAAGTG
Seq A exon
GTGAGACAGAGAGAAGCCTTCGGGCATCCTGGTCCCCTTATCCCTTTGGGGCCCTGATCTCCCTCAAGTAGTTACCTCAAAGGCAAACACTTTTCTACCTATTCTTATCCCCTTAGGCCCTAGTCTTCACCTCAGATCTCACAGTTCACCCATCCTCAACTATCCGGATCAGAGAAACGACTTAAGGGGCGTGTTCAACTGCAAATACAGTCTCCGCCTCAGACCTACTGATTTCGTAACTCCAAATTTAGTTGTAGTTGGAAATCTGCGTTTTAGCAGTTATTACTAGAAATGTAGGTAGCCGAAAATCTTCTTTCTTAGCTGAACATCTTATTCATCTATCCATTTGTTTGACATTAAACTAGGCACCAGTTTCATTAAGATGTGGTCCCTGGTTTAAGCTCAAAAGCAGAGTCAATGCTTGAAGACTTACTAGAAATACAGACTCTAAAGCTCCAGGCCAGATCTGCACTTTAACAAGCCCCCCACCCCCACCCCCGATTATAATGTGCCCAATGAAATTTAGAAGCCACTCAATGCCAGTCACTAAAGGGAATCCTTACCCTACCTGCAAGGAACACTTTTCTTCTCTCCCCAGTACTTAGTCTAGCTTTCTCATTCTAAGAAGCCAGTGGCCCCACACTGCTGGGCCTCCTGCAGCCCTTGGGGTTTATCTGGGCCACCGTGTTTGTTTGCTTGTTTGTTTTTCTGTCTTTTCGGAGTACAGAAGGGAGTTACTCAACACTGCTGTTGCCCAGGCTCCCCAGCCTTGAAGGAGGAAGCAAGGATCATAAAGAGACATAGAATAAGCTAACATGACAAGCTGGAAAGCAGACAATTTGTCCCTCTCCCTCCCGCCCTTCTCCACAAGGGCTTGTAAAGCTAAAAGCGGTTGTCTAATCATTTCCTCCTGGCCTAACTGCCCCTATCTTACCTCCCTCAGAGCCTGTGCTTAACATCCAGGTAACAAAGCCTCTAATTGTTCTCCTCCTCCTTCATTGAAAGTCTCTCCATCCAACCGAGAATGGTGGTCCTCCTGCCTGTCTCCCCAGTGCCAGGATGACAAGTGTACTCCAGCATCCCTGACCCCATCCATATTCATTTAATAGCTCTGTGGTCAGCACTGGCTTCCTGCTCTCCCGTCTTGTCTCTTTCTGGCCACAGCGGCCTCCTCTACGTGGGGTTGTCCAGAGGCTAGCCAAGCACCTGCTAGGCCAGGGGTGTTGGATTTTTTTTTTCCCCTTAGTTTTTCTCAGGCTTCTCTGTACATTCCCTCAATACCCCACCCCACCCCCAGTTTCACACTCAAGGCTCCCCCTCTATAATTCAGGCTGGAAGCAGGAAACTGAGAGCGGGAACAGGGATAGGCAAAGAAATCAGGGAACCAGGGCCTGAGAAGAGCCAGTTGGGCAGTGGGAGGGATAAGAGTAGGACCCTTGTCTCAAAATACATGTATACTCCTACACAGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTTTCTCCCTCTCTCCAACCTCAGGCCTCCATATCACTTTTTTTTTTTTTTTTTTTTTTAGTTTTATGAGACAGGGTTTCTCTGTTTCTCTATGTAGCCCTGGCTGTTCTGGAACTCACTCTGTAGAAGACCAAGTTGGTCTCGAACTCAGAAATGTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGGGCCACCACTGCCGGGCTCCATATCACTTTAAAAGGAAAAAAATGTGTGCTTCATTGCGTTCCAGAGATTTAAAAAAAAAAATCACGGTAAAGTAATAGCTAGAATCAGAGTGCCCGTCTGAGGCCACCAAGCAGGCCCTCTAGATCCCATCAAAGTGTGTGTTGTATGGTCTTGTATCTTGTCTCTTCCAG
Seq C2 exon
GTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTGCATGAATCCGGGTACTCCACCCAGACTCCAATCCAGATTCACCAGTTCCCTTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034793-G6pc3:NM_175935:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(15.8=31.5)
A:
NA
C2:
PF0156916=PAP2=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCCGCTTCATTTCTGCT
R:
GAGTACCCGGATTCATGCACC
Band lengths:
348-2239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: