HsaINT0066925 @ hg19
Intron Retention
Gene
ENSG00000141349 | G6PC3
Description
glucose 6 phosphatase, catalytic, 3 [Source:HGNC Symbol;Acc:24861]
Coordinates
chr17:42148098-42151634:+
Coord C1 exon
chr17:42148098-42148610
Coord A exon
chr17:42148611-42151527
Coord C2 exon
chr17:42151528-42151634
Length
2917 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
3' ss Seq
TTGCATCTGTTCTCTTCCAGGTT
3' ss Score
12.03
Exon sequences
Seq C1 exon
TGCCCAGTAGGGAGGAAAACCGGAGGAGAGCGCAGGAGGAAACAGTACCGGCTGGAGGCCGGTCTTGCAGGAGCGGGGGACTGCTGGGGGCGGGGCTTGGTGGTGACCGCTGGCGGGGCGGGGCCTGGGGCTCAGAGGGGTGGGCTTTGGAGATCAGAGGGTCGACGCTGCTTCGTTGCCTGGACTCTGGTTTCCGCCCTGGAGCAAGCCGGGGCCTGGTCGGCAGCTGGGCCGCCATGGAGTCCACGCTGGGCGCGGGCATCGTGATAGCCGAGGCGCTACAGAACCAGCTAGCCTGGCTGGAGAACGTGTGGCTCTGGATCACCTTTCTGGGCGATCCCAAGATCCTCTTTCTGTTCTACTTCCCCGCGGCCTACTACGCCTCCCGCCGTGTGGGCATCGCGGTGCTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCATCTTCAAGTGGTGAGACAGAGAAGCCCTCCGGCATCCTGGTCCCCACCCCCGAGGGCCCTGAGTCATGT
Seq A exon
GTAAGCCCTGGTCTCTTTCAGCAACTGTCTCAAGGGCCTTCCCACCCCTACTCTGTAGTCCCTGATTTTTTTTCCCCTTGAGCATCTTTGTGCAGCTTGGACTCAAACCTCAGAGTCCAACCATCCTACTCATTAGACCAGTGTTCTTCAAACTGGTCTGATGGAAAAATCACCTAAGGGGCGTGTCTAAAATGTAAATATCCCATCCTCATCTCACACTTACTAATTTAGAAACTCCAAGGGGTTGGGAATTTATTTTTTATTTTTTATTTTTGGTTTATGGGAATTCATATTTTAACAAATATGGTGATTTAAGTAGTGGAGAGTCCTACCTCTCAACTCACTTTTTCATTCATGTATTCATTCATTTGCTATAATTTTTCAGAAGCATGCTTTGTGCTGGGCATCACGGTAGCTGCTAAGGACAGAGACACCTTGCAGATTAAGGTGTGGTCCCTGGACCATGCCCAACGGCATAGGCAGCACTTGAAAACTGGCTAAAAACGCAGACTCTCAGGCCCCGGGCCAGAGCTACTGAATCAAAATCTGCATTTTAACAAGGTTCCCAGGTGATTCCCTGTGCGTATGCAGTAAAGTTTGGGCTAAAGCACTGCTTTCCAGGGAACACTTTCTCTTCTTTCTCTTTCATTCACCAGTAGACTCTTCACACTGAGACTTAGAAGCCAGGAATCCCAGGGACATGGGTGGAGGCCCTGTGGCCCCTGGGGCTGGGCATGCAGCCACACCTCCCTTCACCTCAGCCTCTGTTGCCAGATCCTCAGCCTGGGGGAAGGAAGGGAGGCTCATAGGAGGTATTTCAATGAGCTGGAATGACTTGCTGAAAAACAACATAGAGTTCCCCTCCCTTCCACTCTTTTCCACGAGGGCCTCATCCTTATGTAAAGGGAACCACAGTGATCTGTTCACTTCTTTCTTGCCTAATTGCCCTTTGCTTTGTGCTCTCCTCTCTCAAAGTCTGTATAAGCCTCCCCCTCTATTCCTTGTCCCCCAAAGATCACAATCTCCTTCAGACACTATTAATGTCCCCCAAGTGGCAAAGTCCCTATTCATTTTCATTTTCTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCAGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAAACTCCGTCTCCCGGCTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATCACAGGCGTGTGCCACCACACTCGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCGCCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCTTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCAACCTGGCATTCTTTTTTTTTTTTTTTTTATTCTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGCGTGCAATGGCATGATCTTGGCTCACTGAAACCTCTTTGTCTCTCAGGTTCAAGAGATTCTTCTGCCTCAGCCTCCCCAGTAGCTGTGATTATCGGCACCCACCACCACGCCCGGCTAATTTTTTATTTCTAGTAGAGACAGGGTTTCACCTTGTTGGTCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCCTCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCACCGCCGTTCATTTTCTGTGTGAGCACTTGTTGTATATATACTAGGCTCAGTTTTCAGAGGGGAGAGGCAAGTGCCTTCTGTATATCCCTCCCCAGCACGTGGCTTCCTGCCAGCATCTCTTTTGCTATCCCATCTTTTCTCTTTCTGGCCACAGCAGCCTCTTCATTGTGTGGTTCCCAGGGCCCAGCCAAGCACTTGCTAGACCAGAGGATTTTGACATTTTTTTGTCCTCCTTATTCTTTCTCAGCCTTCTCTGTCCATTTCCCACCCCCATTTTCAGACCTGAGAGGCTCACCTAAATAATTTAGGTGTGGATAATTCAGGCTGTAACTGGGGACATGGAGGCAGGGGTAGCAGGAGGGTTAGTGAGGGCCTGGAGGAGAGAGCTGGGTCCTGGACTCTCTGTGGATGATAAGAGCTGGCCTTGCAGTGAGAGGGGGTAGAGTGGGACGGCTGAGTATCTCAGAGCACACACACGGCTTACCACAATCTCTTGCCTCTGTATCAGTTTTATTTTTTATTTTATTCACTTTTTCTTTTTTTGAGACAGGATCTCACTCCATCACCAGGCTGGAGTACAATGGCACAATCACAGCTCACTGCAGCCTCAACCTCCTGGGCTCAAGTGATCCTTCCCACTTCAGCCTCTGGAGTAGCAGGGACTACAGGCACACCCCAAGATGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGGGGTTTTGTCATGTTGCCCAGGCTATTCTCGAACTCCTGGGCTCAAGTGATCTGCCCGCCCAGCCTCCCAAGTAGCTGAGACTATAGGTGTGCACCACCACTTCCAGCTAATTTTTTGTTTTTGTTGAATCTGGGTCTTGCTATGTTGCCCAGGCTGGTCATGAACTCCTGGCTTCAAGTGATCCTCCAGCTAAGGCCTCCCAAAGTACTGGGATTACAGTCATGAGCCACTGTACCTGGCCCCAGACTAGTTTTTAAAAATAGTGTTTCCACAGGCTGAGGGTTAGGAAAAAAAAAAGAAAAGAAATAGTGTGCTTTCTTTCTCCTGTTCTAAGGTAGAAAACCATGGCAAGGTATCCATGGATACCTTGAGAGCAGTGGACAGAATCGTAGTCCCTTTTTGACTTCACCCCTCAGGCCCTCCAGAGTACTCTGTGTCCTGCCCGCCTTGTACCCCCCCTGGCTGTGTGTGCATGTGGAAAGTCATCTTGCATCTGTTCTCTTCCAG
Seq C2 exon
GTTTCTTTTTGGAGACAGGCCCTTTTGGTGGGTCCATGAGTCTGGTTACTACAGCCAGGCTCCAGCCCAGGTTCACCAGTTCCCCTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141349-G6PC3:NR_028582:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0156916=PAP2=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)