HsaINT0066925 @ hg38
Intron Retention
Gene
ENSG00000141349 | G6PC3
Description
glucose-6-phosphatase catalytic subunit 3 [Source:HGNC Symbol;Acc:HGNC:24861]
Coordinates
chr17:44070735-44074266:+
Coord C1 exon
chr17:44070735-44071183
Coord A exon
chr17:44071184-44074159
Coord C2 exon
chr17:44074160-44074266
Length
2976 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
TTGCATCTGTTCTCTTCCAGGTT
3' ss Score
12.03
Exon sequences
Seq C1 exon
AGTAGGGAGGAAAACCGGAGGAGAGCGCAGGAGGAAACAGTACCGGCTGGAGGCCGGTCTTGCAGGAGCGGGGGACTGCTGGGGGCGGGGCTTGGTGGTGACCGCTGGCGGGGCGGGGCCTGGGGCTCAGAGGGGTGGGCTTTGGAGATCAGAGGGTCGACGCTGCTTCGTTGCCTGGACTCTGGTTTCCGCCCTGGAGCAAGCCGGGGCCTGGTCGGCAGCTGGGCCGCCATGGAGTCCACGCTGGGCGCGGGCATCGTGATAGCCGAGGCGCTACAGAACCAGCTAGCCTGGCTGGAGAACGTGTGGCTCTGGATCACCTTTCTGGGCGATCCCAAGATCCTCTTTCTGTTCTACTTCCCCGCGGCCTACTACGCCTCCCGCCGTGTGGGCATCGCGGTGCTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCATCTTCAAGTG
Seq A exon
GTGAGACAGAGAAGCCCTCCGGCATCCTGGTCCCCACCCCCGAGGGCCCTGAGTCATGTGTAAGCCCTGGTCTCTTTCAGCAACTGTCTCAAGGGCCTTCCCACCCCTACTCTGTAGTCCCTGATTTTTTTTCCCCTTGAGCATCTTTGTGCAGCTTGGACTCAAACCTCAGAGTCCAACCATCCTACTCATTAGACCAGTGTTCTTCAAACTGGTCTGATGGAAAAATCACCTAAGGGGCGTGTCTAAAATGTAAATATCCCATCCTCATCTCACACTTACTAATTTAGAAACTCCAAGGGGTTGGGAATTTATTTTTTATTTTTTATTTTTGGTTTATGGGAATTCATATTTTAACAAATATGGTGATTTAAGTAGTGGAGAGTCCTACCTCTCAACTCACTTTTTCATTCATGTATTCATTCATTTGCTATAATTTTTCAGAAGCATGCTTTGTGCTGGGCATCACGGTAGCTGCTAAGGACAGAGACACCTTGCAGATTAAGGTGTGGTCCCTGGACCATGCCCAACGGCATAGGCAGCACTTGAAAACTGGCTAAAAACGCAGACTCTCAGGCCCCGGGCCAGAGCTACTGAATCAAAATCTGCATTTTAACAAGGTTCCCAGGTGATTCCCTGTGCGTATGCAGTAAAGTTTGGGCTAAAGCACTGCTTTCCAGGGAACACTTTCTCTTCTTTCTCTTTCATTCACCAGTAGACTCTTCACACTGAGACTTAGAAGCCAGGAATCCCAGGGACATGGGTGGAGGCCCTGTGGCCCCTGGGGCTGGGCATGCAGCCACACCTCCCTTCACCTCAGCCTCTGTTGCCAGATCCTCAGCCTGGGGGAAGGAAGGGAGGCTCATAGGAGGTATTTCAATGAGCTGGAATGACTTGCTGAAAAACAACATAGAGTTCCCCTCCCTTCCACTCTTTTCCACGAGGGCCTCATCCTTATGTAAAGGGAACCACAGTGATCTGTTCACTTCTTTCTTGCCTAATTGCCCTTTGCTTTGTGCTCTCCTCTCTCAAAGTCTGTATAAGCCTCCCCCTCTATTCCTTGTCCCCCAAAGATCACAATCTCCTTCAGACACTATTAATGTCCCCCAAGTGGCAAAGTCCCTATTCATTTTCATTTTCTCTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCAGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAAACTCCGTCTCCCGGCTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATCACAGGCGTGTGCCACCACACTCGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCGCCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCGCTTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCAACCTGGCATTCTTTTTTTTTTTTTTTTTATTCTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGCGTGCAATGGCATGATCTTGGCTCACTGAAACCTCTTTGTCTCTCAGGTTCAAGAGATTCTTCTGCCTCAGCCTCCCCAGTAGCTGTGATTATCGGCACCCACCACCACGCCCGGCTAATTTTTTATTTCTAGTAGAGACAGGGTTTCACCTTGTTGGTCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCACCCTCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCACCGCCGTTCATTTTCTGTGTGAGCACTTGTTGTATATATACTAGGCTCAGTTTTCAGAGGGGAGAGGCAAGTGCCTTCTGTATATCCCTCCCCAGCACGTGGCTTCCTGCCAGCATCTCTTTTGCTATCCCATCTTTTCTCTTTCTGGCCACAGCAGCCTCTTCATTGTGTGGTTCCCAGGGCCCAGCCAAGCACTTGCTAGACCAGAGGATTTTGACATTTTTTTGTCCTCCTTATTCTTTCTCAGCCTTCTCTGTCCATTTCCCACCCCCATTTTCAGACCTGAGAGGCTCACCTAAATAATTTAGGTGTGGATAATTCAGGCTGTAACTGGGGACATGGAGGCAGGGGTAGCAGGAGGGTTAGTGAGGGCCTGGAGGAGAGAGCTGGGTCCTGGACTCTCTGTGGATGATAAGAGCTGGCCTTGCAGTGAGAGGGGGTAGAGTGGGACGGCTGAGTATCTCAGAGCACACACACGGCTTACCACAATCTCTTGCCTCTGTATCAGTTTTATTTTTTATTTTATTCACTTTTTCTTTTTTTGAGACAGGATCTCACTCCATCACCAGGCTGGAGTACAATGGCACAATCACAGCTCACTGCAGCCTCAACCTCCTGGGCTCAAGTGATCCTTCCCACTTCAGCCTCTGGAGTAGCAGGGACTACAGGCACACCCCAAGATGCCTGGCTAATTTTTGTATTTTTTGTAGAGATGGGGTTTTGTCATGTTGCCCAGGCTATTCTCGAACTCCTGGGCTCAAGTGATCTGCCCGCCCAGCCTCCCAAGTAGCTGAGACTATAGGTGTGCACCACCACTTCCAGCTAATTTTTTGTTTTTGTTGAATCTGGGTCTTGCTATGTTGCCCAGGCTGGTCATGAACTCCTGGCTTCAAGTGATCCTCCAGCTAAGGCCTCCCAAAGTACTGGGATTACAGTCATGAGCCACTGTACCTGGCCCCAGACTAGTTTTTAAAAATAGTGTTTCCACAGGCTGAGGGTTAGGAAAAAAAAAAGAAAAGAAATAGTGTGCTTTCTTTCTCCTGTTCTAAGGTAGAAAACCATGGCAAGGTATCCATGGATACCTTGAGAGCAGTGGACAGAATCGTAGTCCCTTTTTGACTTCACCCCTCAGGCCCTCCAGAGTACTCTGTGTCCTGCCCGCCTTGTACCCCCCCTGGCTGTGTGTGCATGTGGAAAGTCATCTTGCATCTGTTCTCTTCCAG
Seq C2 exon
GTTTCTTTTTGGAGACAGGCCCTTTTGGTGGGTCCATGAGTCTGGTTACTACAGCCAGGCTCCAGCCCAGGTTCACCAGTTCCCCTCTTCTTGTGAGACTGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141349:ENST00000269097:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(22.6=49.3)
A:
NA
C2:
PF0156916=PAP2=FE(22.6=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development