BtaINT0067826 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95885678-95890196:-
Coord C1 exon
chr11:95890071-95890196
Coord A exon
chr11:95885774-95890070
Coord C2 exon
chr11:95885678-95885773
Length
4297 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
TCTCTTCTTTCAACTTACAGAAA
3' ss Score
10.37
Exon sequences
Seq C1 exon
GTCACTGCTGAAACTCAAGAGAAAGAAAAACTCATCACACATTTGCAGGAGAAGGTCGCATCCCTGGAGAAGAGACTAGAGCAGAATCTCTCAGGAGAAGAACATGTGCAGGAACTTCTGAAAGAG
Seq A exon
GTAACTAGTCTGGAGTAAACCTCAAACTTAAATCCCCCACCCCAACCCAGATAAGTCAAATGCCACTGTCTGAATGACTCCACCCTGAAAAATACTGCCTACAGAATTAAGTTCAAGCTTCCTTCTATAACATAAAAGGCTTTTCTCATGATCTGGCCCTTTGCTTAACTTTCCAGTCTTGTTTCATGACCTGAACCCGTCATCACTGTGACTTTCAAGAAGCTGTAGTTCCCCAGATGTCTCCTGCTGTTTCACACCTCTAGTGTCTTCCCTAGAGCCAGACATCCTGGCTGGTTCACCTAGAGCCAGACTCACCTAGAGCCAGACATCCTGCAGTCCGAAGTCAACTGGGCCTTAGGAAGCATCACTATGAACAAAGCTAGTGGAGGTGATGGAATTCCAGCTGAGCTGTTTCAAGTCCTAAAAGATTATGCTGTGAAAGTGCTGCACTCAGTTCAGTTCAGTTTAGTCGCTCAGTCGTGTCCGACTCTTTGTGACCCCATGGACTGCAGCATGCCAGGCTTCCCTGTCCATCACCAACTCCTGGGGCTTGCCCAAATTCATATCCAAGTCGGTGATGCCATCCAACCATTTCATCCTCTTCGTCGTCCCCTTCTCCTGCCTTCAGTCATTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAGTTCTTCACATCAGGTGGCCAAAATACTGGAGTTTCGGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATTTCCTTTAGGATTGACTGGTTTCATCCCCTTGCAGTCCAAGGGACTCTGAAGAGTCTTCCAACACCACAGTTCAAAAACATTAATTCTTCGGTGCTCAGCTTACTTTATAGTCCAGCTCTCAACATTCATACATGACCATTGGAAAAACCATAGCTTTATTGGCAAAGTAATTTCTCTGCTTTTCAATATGCTGTCTAGGTTGGTCAAAGCTTTTCTTCCAAAAGGCAAGCATCTTTTAATTTCTTGGCTGCAGTCACCATCTGCAGTGATTTTGGGGTGCAAGAAAATAAAGTCTGTCACTGTTACCATTGTTTCCCCATCTATTTGCCATCAAGTAATGGGACCAGATGCCATGATCTTAGTTTTCTGAATGTTAAGTTTTAAGCCTACTTTTTCACTGTCCTCTTTCACTTTCATCAGGAGGCTCTTTAGTTCTCCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATAATTCTTCAGGCAATCTTGATTCCAGCTTGTGGTTCATCCATCCCAGCATTTCGCATGATGTACTCTGCATATAAGTTAAATAAGCAGGGTGATAGTATGCAGCCCTGATGTACTCCTTTCCCAATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTAGTGCTTCTTGACCTGCAAACAGATTTCTCAGGAGGCAGGTAAGGTGGTCTGGTATTTCCATATCTTGAAGAACTTTGCACGGTTTGTTATGATCCACAGAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAGTAGATGTTTTTCTGGAATTCTCTTGCTTTTTCGATGATCCAGTGGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCACGGTTCATGTACTGTGGAAGTGTGGCTTGGAGAATTTTGAGCATTACTTTGCTAGCGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTCTGGGATTGGAGTGAAAACTGATCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATTCCATCACCTCCACTAGCTTTGTTCATAGTGATGCCTCCTAAGGCCCACTTGACTTCGCATTCCAGGATGTCTGGCCCTAGGTGAGTGATCACACCATCGTGGTTTTCTGGGTCATGAACATCTTCTTTGTATGGTTCTTCTGTGTATTCTTGCCCCCTCTTCTTAATACCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATTAAGCCCATCTTTGCATGAACTGTTCCCTTGGTATTTCTAATTTTCTTGAAGCGATCTCGAGTTTTTCCCATTCTGTTATTTTCCTCTATTTCTTTGCATTGATCACTGAGGAAGGATTTCTTATCTCTCCTTGCTATTCTTTGGAACAGGCTTGTCTAACTCAATGAAACTATGAGCCATGCCGTGTAGGGCCACCCAAGTTGGACGGGTCATGGTGGAGAGTTCTGACAAAACATGGTCCACTGGAGAAGGGAATGGCAAACCACTTCCATATTCTTGCCTTGAGAACCCATGAACAGTATAAAAAGGCAAAAAGATATGACACTGAAAGATGAACTCCCTAGGTTGGTAGGTGTCCAATATTCTACTGGAGAAGAGTGGAGAAATAACTCCAGAAAGATTGAAGAGATGGAGCCAAAGCAAAAACGCCCATTTGTGGATGTGACTGGTGATGGAAGTAAAATCCAATGTTGCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAATGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAGTCCCAAAGAAAGGTAATGCCAAAGAATGTTCAAACTGCTGCACAATTGCACTCATCTCACACGCTAGCAAAGTAATGCTCAAAATTGTCCAAGCAAGGCTTCAATAGTACGTGAACCATGAACTTCAAGATGTTCAAGCCAGAACTAGAAAAGGCAGAAGAACCAGAGATCAAATTGCCAACATCTGCTGAATCATTGAATAAGCATGAGAGTTCCAGACAAACATCTACATCTGCTTTATTGATTACATCACAGCCTTTGACTGTGTGGATCACAACAAACTGGAAAATTCTTCAAGAGATGGGAATACCAGACCACCTTACCTGCCTCCTGAGAAATCAGTTTGCAGGTCAAGAAGCAACAGACCTGGAACAACAGACTGGTTCCAACTTGGAAAAGGAGTACATCAAGGCTGTACATTGTCACCCTGCTTATTTAACTTACATGCAGAATATATCATGTGAAATGCCAGGCTGGATGAACCTGAAGCTGAAATCAAGATTGCCTGAAGAAATATCAATAACTTCAGATATGCAGATGAGACCACCCTTATGGCAGAAAGTGAAGAGGAACTGAGGAGCCTCTTGATGAAAGTGAAAGGTGAGGAAAAAGCTGGCTTAAAACTCAATATTCAGGAAACCAAGATCATTGCATTCGGTCACATCACTTTATTGCAAATAGATGTGGAAACAGTGACAGACTTTATTTTCTTGTGCTCCAAAATCACTGCAGATGGTGACTGCATCCATGAAATTAAAAGACAAGCATCTTGGAAGAAAAGCTATGACCAACCTAAACAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAAAGATCCATCTGGTCAATGCTATGGTTTTTCCATTAATCAAGTATCAATGTGAGATTTGGACTATAAAGAAAGCTGAGCACTGAAGAATTGATACTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAAGAGATCAAACCAGTCAATCCTAAAGGAAATCCGTCCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAACTCCAGTACTTTGGCCAGCTGATACAAAGAACTAACTACTTAAAAAGGCCTTGAAGCTGGGAAAGATTGAAGGCAGGAGGTGAAGGGGACAACAGAGGATGAGATGGTTAGGTTGTATGGCATTACCAACTCGATGGAAATGAGTTTGAGCAAGCTCCAGGTGTTGGTAATGGACAGGGAAGCCTGGCATGCTGCAGTCCGTGGGATCGCAAAGAGTCATACGCTATGGAACTGAACTGAACTGAACTGCATGTCCTCCCTCTGCCCAGGTGCTCTGGTTTGGCCCTGGCCAGCTATGAAGAGTAAAGCCTCTTCCTTTCCTGAGGCAGTGAGCATCCCCTGCTCTCTGCTGCCGCTTTGTGAGCACTGTTACACTCTGTTATATACTCTCTTGGGTTAGTCTTTGCCGCAGCCTCAGTCAAAAACCTGTGAAATTCATCTTTGTATACTTTACAATATGTGAATTTTCTCTCTACTGTTTTGGAGTTTTTTGTGCATATTCATGTCCTTCGTGCCTCGCACAAATCATAATGTGTTGTAGATATCAGTAAATGTATATGCAATGGAGAAATGACTGTTTCCTTTTTCTCTTCTTTCAACTTACAG
Seq C2 exon
AAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAGCAGCTCTTGGCAGCCAGAAGCAGCCAGGCCAAGGCCATCAACAACCTGGAGACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development