RnoINT0066231 @ rn6
Intron Retention
Gene
ENSRNOG00000014493 | Golga1
Description
golgin A1 [Source:RGD Symbol;Acc:1311305]
Coordinates
chr3:23329133-23331418:-
Coord C1 exon
chr3:23331293-23331418
Coord A exon
chr3:23329229-23331292
Coord C2 exon
chr3:23329133-23329228
Length
2064 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATTTATCTTTTAAATTACAGAAA
3' ss Score
7.05
Exon sequences
Seq C1 exon
GTCAATGCTGAAACTCAAGAAAAAGAAAAAGTCATCACACATTTACAAGACAAGGTTACATTCTTGGAAAAGAGACTAGAACAGGACTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
GTAATGTCTGCTCGTGCTAGCCCGTGTTAGAGAGGCATGGATTGCACATGTTCTGGAGGGTTACATGGAAGTTCTCTGCAACTTTGTATAGCTCTTTTGGGCCCACACTGGAATAAAGCCCTCTTTCTCCCTAATTTCCCTAGTAGTTGAGACTATAGGCACATAGCACAGTACTTGGCTTATTCAACTTTGGATTGAAATAAAAATAACCTTAGCTGGGCACTGGTGATGGCACACTCCTTTAATCCAGGAGATCTCTGAACTCTAGGCCAGCCTGGTCTACAGAGTGTTCCAGGACAGCCAAGGATACATAAAGAAGCTCTGTCTCTAAAAAACAATCAAAAATAGCCTTATAGTGGTGGACAGTGTGTCCCAATTCTTAGACTGCTTATCTGACATGTACCAAGCTCCTGGATTTAGTCTCTAACACTGTATTAAACCAGGAGTGGAAGTGCATGTCTCTAATTCCAGAATATAGAAGGAAGAAGCAAAAGTTTAGGGTCATCCTTGGCTATATGGTGAGTTTGAGGCTAGCCTAGGCTATATGAGACCCTGTCTCAAAACAAAAACCAGTCTTCATGTCTCCTATGTTATTTCTCAGAGAAGGAGAGAGCTTTGTTTGCAGGACTGTAAGGACAGATTGCATCCTGACTATACGATGACTGATGCTACCCAGGCTGTCTTGTCTTACTGTCCTGTTCCCTTCCCTATACTTTCCCTTTCCCCTCTTTCTACTGGCAAAGAAAATTATGAAATCCTTTAGCTTGAGCAAAAACTACCTTGCATCAGAGGTTTACCTTGGCTGAGGGAGCTGTTGAGCCAACTCACCTTACCCTGTAGTAGAGGTAAACTGTTTCTCCTCTTTGTAGCCTAGTGATTAGCCTCATCATGGCAAACTTGTCAAAGCCACGAGCTCTGAGCCTGTCCTAGATTAGACTCCACTGTCTTATCAAGCCAAGCTTCTCCTGCTCTCCAGCCACTGCAGTACTGCAGAGCTTCCTAAAGCACTAGCTACAGGTGCATTGAAGTCTCCTTCAGGCCACACCACACCAGAATCTCCTTCGCTCTCGTCACTCCTATGAAACTAATCTTCTCAAACTGTATTTCTGATCATATCCCTCCTTTGAACACCGTCCACAATTTCTTAAACATCTGCATTGCATACAAGGTGGACTCTAACTTGTAAGTTGGTTTCTAGAGGCAAGCTTCTGTGTTTGTATCTTGTGTCTAGTCACTGACTTGAAGCTAGTCAATTAATCTCTTTGTATTGTTTTCTCTCTAAAATTGGGTTTATTATTGTGTCAGCCATGATGAAATAATAGAAATTGGAGCATAATAGGTATTACTATTATTATAATAACTATTATTGTGCCATAATCAACTATTATTAAATAGTAAAGAGGAATTACTTGGGAGTTTTAAAGCATATATCTCTAATCCTTTTAAGAAATTCTGACATTAGCAGATCTAGAATAAGACCTCACATTTAGCCAGCCTCCTCAGTAAAGTTAATGCCAGGTTTTGAAAGATCCATTTGAAAAATTGCTGCCTACAAACTAAAGTAAAACTTCCTTTTTGCAACACTAAAGAATTCCTCATTATTTGACCCTTTTGCTGAACATCACAGACTTAATTCATTGACCTAAGCCCCATCATCACATAGACTTCTGAAGAGCTGTAGTTCTCTGAACACAGCAAGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGAGATAGGGTCTTACTATGTGGCTCTGGCTGGCCTTGAACTCACAGAGATCTGCCTGCTTCTGCCTCCTGGGATTAAATGCTTTCCACCACCATGCCTGGCTTCCAGTGTATGCTTTTGTTGTTAGTCATGTGTCCCAGCCTTGGAAAGAAAAGACTGCCAAATTTATTTGTGTGTCATCTATGATATGTGGATTATGCCTACTTTGCTGATGGTTTTATCTATTTGTGCCTAGCACAAATGTTATAGCATCAATAAATATTCATTAAATGTGGAAACAACCCCTTCCTCTTATTTATCTTTTAAATTACAG
Seq C2 exon
AAAACTGTGGCTGAACAGAAACTGCAGGATACTAGGCAACAGCTCTTGGCTGCCAAGAACAGCCACACCAAGGCAGTTGACCTCCTGGAGACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014493:ENSRNOT00000019703:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]