GgaINT0126274 @ galGal3
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
NA
Coordinates
chr17:10290274-10291197:+
Coord C1 exon
chr17:10290274-10290399
Coord A exon
chr17:10290400-10291101
Coord C2 exon
chr17:10291102-10291197
Length
702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TAACCCAATATAATCTTCAGAAA
3' ss Score
3.7
Exon sequences
Seq C1 exon
ATGACTTTTGAATTTGCTGAGAGAAGTAAACTTATTGAACAGTTGCAGGAAAAAGTGTCTTCCTTGGAAAAGAAGTTAGAAAGAAATCTTTCAGGGGATGAACATGTACAGGAACTGCTCAAGGAG
Seq A exon
GTAATTTTACACTTACAGACTGAATAAAAGTGCAGTTGTAAGGAATTATTTTAGAATATACACATGGAAAGTATATATGATGATGTAATGCAGGCATGTTTGTCTCTTTAGTGTATATTGACACACTGTGCTGGACAGGCTTGTGTGGGTGGCTACGTTGGGCCCGTTTATGTACATGCTGCACATATGTCTGCATTGGTCTTTGCATTGTTTGTTTAGGCAATGCATCTGTCTGTTTAGAAGGGAAAGAGGAGGTTTTTTTAACATGCCCACAAAAGGCAGAGCAGCTGGAGAATTTTATTGGTTAACCCTTACAGAGAACAGTGCACTCTGTTTCTTGGTATTTATCTTCTATCATCATGATTCCCAAAGCATTGGGATGGGAGTGGGAAGCTGATTTGCACATAGGTGTGTAAACAGAATGTTGAATATTCAACACTTGAGCCTCAGAATTGTTAAGAAACAGCTGAAAACATGAAGAAATTTGCTTCTTGTTAGTGCTCTTTTCACTACTTGGGCTTTCTCCAGAACTTAAGCTCCTATTTCAGAGTCACCTTGGAGCAATGTTTTCCTATCTGGATCAAAAAAAAACCTGTTCAAGTTTAGTATTGTGTTATTAATGAAATTCAAAGAAACACCTTAATTAAAATCTTATCTCTTTGTCCATCCTACCCTCTGTTCTTAACCCAATATAATCTTCAG
Seq C2 exon
AAAGCTTCTCTTGAGCAGAAACTAGATGAAACCAGTCAACAGATATTAACAGACAGAATGCATCATGCTAATGGCATGAACCAGTTAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTTTGAATTTGCTGAGAGA
R:
CTGTGTTTCTAACTGGTTCATGCC
Band lengths:
222-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]