GgaINT0126274 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9569281-9570204:+
Coord C1 exon
chr17:9569281-9569406
Coord A exon
chr17:9569407-9570108
Coord C2 exon
chr17:9570109-9570204
Length
702 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TAACCCAATATAATCTTCAGAAA
3' ss Score
3.7
Exon sequences
Seq C1 exon
ATGACTTTTGAATTTGCTGAGAGAAGTAAACTTATTGAACAGTTGCAGGAAAAAGTGTCTTCCTTGGAAAAGAAGTTAGAAAGAAATCTTTCAGGGGATGAACATGTACAGGAACTGCTCAAGGAG
Seq A exon
GTAATTTTACACTTACAGACTGAATAAAAGTGCAGTTGTAAGGAATTATTTTAGAATATACACATGGAAAGTATATATGATGATGTAATGCAGGCATGTTTGTCTCTTTAGTGTATATTGACACACTGTGCTGGACAGGCTTGTGTGGGTGGCTACGTTGGGCCCGTTTATGTACATGCTGCACATATGTCTGCATTGGTCTTTGCATTGTTTGTTTAGGCAATGCATCTGTCTGTTTAGAAGGGAAAGAGGAGGTTTTTTTAACATGCCCACAAAAGGCAGAGCAGCTGGAGAATTTTATTGGTTAACCCTTACAGAGAACAGTGCACTCTGTTTCTTGGTATTTATCTTCTATCATCATGATTCCCAAAGCATTGGGATGGGAGTGGGAAGCTGATTTGCACATAGGTGTGTAAACAGAATGTTGAATATTCAACACTTGAGCCTCAGAATTGTTAAGAAACAGCTGAAAACATGAAGAAATTTGCTTCTTGTTAGTGCTCTTTTCACTACTTGGGCTTTCTCCAGAACTTAAGCTCCTATTTCAGAGTCACCTTGGAGCAATGTTTTCCTATCTGGATCAAAAAAAAACCTGTTCAAGTTTAGTATTGTGTTATTAATGAAATTCAAAGAAACACCTTAATTAAAATCTTATCTCTTTGTCCATCCTACCCTCTGTTCTTAACCCAATATAATCTTCAG
Seq C2 exon
AAAGCTTCTCTTGAGCAGAAACTAGATGAAACCAGTCAACAGATATTAACAGACAGAATGCATCATGCTAATGGCATGAACCAGTTAGAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTTTTGAATTTGCTGAGAGA
R:
CTGTGTTTCTAACTGGTTCATGCC
Band lengths:
222-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]