MmuINT0072133 @ mm9
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:38894560-38896872:-
Coord C1 exon
chr2:38896747-38896872
Coord A exon
chr2:38894656-38896746
Coord C2 exon
chr2:38894560-38894655
Length
2091 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATTTATTTTTTAAATTACAGAAA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTCACTGCTGAAACGCAAGAAAAAGAAAAAGTCATCACACATCTACAAGAGAAGGTTATATTCTTGGAAAAGAGACTAGAACAGAATTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
GTAATGGCTGCTCATGCTGGCCAGTGTTAGAAAGGCATGGTATTGCATATGTTCTGAGTTTCTGATCTGGAGGGTTAGATGAAAGCTCTCTGCAACTTTGTATAGCTCTTTTGAGTCCCAAATTCTGGGATCAAGCCATCTTTCTCCCTAATTTCCCTAGTATTTGAGACTATAGGCACATACTACAGCATTTGGCTTATTCTACTTTGGATTGAAATAAAAATAGCCTTAGCTGGGCAGTGGTGGCGCACTCCTTTAACCCCAGCACTCGGGAGGCAAAAACAGGTGAATCTCTGAGCTCTAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACATAGAGAAGCCCTGTCTCTAAAAAACAAACAAACAAACAAGCAAGCAAGCAAAAATAGCCTTATAGTGGTGGACATTGTGTCCCAATTCTTACACTGCTTGCCTGACTTGTACAAAGTCCTGAATTTAGTCTCTAGCACTTTATTAAACCAGGTGTGGAAGTGCATGTCTGTAATTCAATAATATAGAACGTAGAAGTAAAACTTTAGGGCCATCCTTGGCTACATGGTGAGTTTGAAGCTAGCCTAGGCTACATGAGACCCTGTCTCAAAACAAAAACCAGTCTTCATGTCTCCTTTGTTGTTTCTCAGAGAAGGAGAGAACTTTGTTTACAGGACTATAAGGACAGATTGCATTCTGACCATATGATGATTGATGCTACCCAGGCCGCCTTGTCTTGCTGCCCTGTTCCCTTCCCTGCACTTTCCCCTCTTTCTACTGGCAAAGAAAATTATGAAATCCTTTAGCTTGAGCAAAAACTACCTTGCACCATAGGTTTACCTTGGCTGAGGGAGCTGTTGAGCTGACTGACCTTACCCTATAATAGAGGTAAACTTTTTCTCCTCTTTGTAGCCCAGTGATTAGCCTCATCATGACAAAGTTGTCAAAGTCATGAGCTCTGAGCCTATCCTAGAATAGACTCCACTGTCTATCAAGCCAAGCTTCTCCTCCTCTCCAGCCACTGCAGTACTGCAGTGCTTCCCAAAGCAATAAAGGTGCATTGAAGTCTCTAGGCTGGCCACCCTACAGCAGTCTCTCCTTCACTATCGTCACTCCTATGAAACTAATCTTTTCCAACTACATAGTTCACTATGGCTTTCTGATCATATCAACCTTGAACACCGTCCACAATTCCCTTAAACATCTACATAAGTATAAGGTGTAAGTTGGTTTCTAGAGGCCAGCATCTGTGTTTGTATCTTGTGTCTAGTCACTGTGACTTGAAGCTAGTCAGTTAATCTCTTTGTATTGTCTTCTCTATAAAATTGAGTTTATTATTGTGTCAGACACGATGAAATAATAAAAATTGGAGCATAGAAGGTATTACTGTTATTATAATCATTATTATGCCATAGTCAACATTATTAAAGAGTAAAGAGGAATTATTTGCAAGTTTGTTGAAAGCACTTTTCCAAGAAATTCTGACATCAGCAGATATAGACTAAGACCCCACATTTAGCCAGCCTCCTCAGTAAAGTTAATGCCAGGTTTTGGAAGATCCATTCGAAAAATTGCTGCCTGCAAAATAAAGTAAAACTTCCTTTTGCAACACTAAAGAATTCCTCATTATTTGGCCCTTTTGCTAAACATCACAGTCTTGATTTATTGACCTAAGCCCATCATCACATTGACTTCTGAAGAGCTGTAGTTCTCTGAACACAGCAAGCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGAGACAGATTCTTACTATTGGCCTTGAGTTCACAGAGATCTGCCTGTTTCTGCCTCCTGGGATTTCCACCACCATGCCTGGCTTTGTATATGCTTTTGTTATTAGTCATGTGTCCCAGCCTTGGAAACAAAAGACTGACAAATTTATTTGTGTGTCCTCTATGATATGTGATGACATCTACTTTGCTGGTTGTGTTATCTGTTTGTGCCTAGCACAAATGTTATAGCATCAATAAGTATTCATTAAATGTGGAAACAACTCTTTCCTCTTATTTATTTTTTAAATTACAG
Seq C2 exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754-Golga1:NM_029793:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: