MmuINT0072133 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39039040-39041352:-
Coord C1 exon
chr2:39041227-39041352
Coord A exon
chr2:39039136-39041226
Coord C2 exon
chr2:39039040-39039135
Length
2091 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
ATTTATTTTTTAAATTACAGAAA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTCACTGCTGAAACGCAAGAAAAAGAAAAAGTCATCACACATCTACAAGAGAAGGTTATATTCTTGGAAAAGAGACTAGAACAGAATTTATCAGGAGAAGATCATGTACAAGAACTCTTGAAAGAG
Seq A exon
GTAATGGCTGCTCATGCTGGCCAGTGTTAGAAAGGCATGGTATTGCATATGTTCTGAGTTTCTGATCTGGAGGGTTAGATGAAAGCTCTCTGCAACTTTGTATAGCTCTTTTGAGTCCCAAATTCTGGGATCAAGCCATCTTTCTCCCTAATTTCCCTAGTATTTGAGACTATAGGCACATACTACAGCATTTGGCTTATTCTACTTTGGATTGAAATAAAAATAGCCTTAGCTGGGCAGTGGTGGCGCACTCCTTTAACCCCAGCACTCGGGAGGCAAAAACAGGTGAATCTCTGAGCTCTAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACATAGAGAAGCCCTGTCTCTAAAAAACAAACAAACAAACAAGCAAGCAAGCAAAAATAGCCTTATAGTGGTGGACATTGTGTCCCAATTCTTACACTGCTTGCCTGACTTGTACAAAGTCCTGAATTTAGTCTCTAGCACTTTATTAAACCAGGTGTGGAAGTGCATGTCTGTAATTCAATAATATAGAACGTAGAAGTAAAACTTTAGGGCCATCCTTGGCTACATGGTGAGTTTGAAGCTAGCCTAGGCTACATGAGACCCTGTCTCAAAACAAAAACCAGTCTTCATGTCTCCTTTGTTGTTTCTCAGAGAAGGAGAGAACTTTGTTTACAGGACTATAAGGACAGATTGCATTCTGACCATATGATGATTGATGCTACCCAGGCCGCCTTGTCTTGCTGCCCTGTTCCCTTCCCTGCACTTTCCCCTCTTTCTACTGGCAAAGAAAATTATGAAATCCTTTAGCTTGAGCAAAAACTACCTTGCACCATAGGTTTACCTTGGCTGAGGGAGCTGTTGAGCTGACTGACCTTACCCTATAATAGAGGTAAACTTTTTCTCCTCTTTGTAGCCCAGTGATTAGCCTCATCATGACAAAGTTGTCAAAGTCATGAGCTCTGAGCCTATCCTAGAATAGACTCCACTGTCTATCAAGCCAAGCTTCTCCTCCTCTCCAGCCACTGCAGTACTGCAGTGCTTCCCAAAGCAATAAAGGTGCATTGAAGTCTCTAGGCTGGCCACCCTACAGCAGTCTCTCCTTCACTATCGTCACTCCTATGAAACTAATCTTTTCCAACTACATAGTTCACTATGGCTTTCTGATCATATCAACCTTGAACACCGTCCACAATTCCCTTAAACATCTACATAAGTATAAGGTGTAAGTTGGTTTCTAGAGGCCAGCATCTGTGTTTGTATCTTGTGTCTAGTCACTGTGACTTGAAGCTAGTCAGTTAATCTCTTTGTATTGTCTTCTCTATAAAATTGAGTTTATTATTGTGTCAGACACGATGAAATAATAAAAATTGGAGCATAGAAGGTATTACTGTTATTATAATCATTATTATGCCATAGTCAACATTATTAAAGAGTAAAGAGGAATTATTTGCAAGTTTGTTGAAAGCACTTTTCCAAGAAATTCTGACATCAGCAGATATAGACTAAGACCCCACATTTAGCCAGCCTCCTCAGTAAAGTTAATGCCAGGTTTTGGAAGATCCATTCGAAAAATTGCTGCCTGCAAAATAAAGTAAAACTTCCTTTTGCAACACTAAAGAATTCCTCATTATTTGGCCCTTTTGCTAAACATCACAGTCTTGATTTATTGACCTAAGCCCATCATCACATTGACTTCTGAAGAGCTGTAGTTCTCTGAACACAGCAAGCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGAGACAGATTCTTACTATTGGCCTTGAGTTCACAGAGATCTGCCTGTTTCTGCCTCCTGGGATTTCCACCACCATGCCTGGCTTTGTATATGCTTTTGTTATTAGTCATGTGTCCCAGCCTTGGAAACAAAAGACTGACAAATTTATTTGTGTGTCCTCTATGATATGTGATGACATCTACTTTGCTGGTTGTGTTATCTGTTTGTGCCTAGCACAAATGTTATAGCATCAATAAGTATTCATTAAATGTGGAAACAACTCTTTCCTCTTATTTATTTTTTAAATTACAG
Seq C2 exon
AAAACAGTTGCTGAACAGAATCTGGAAGATACTAGGCAGCAGCTCTTGGCTGCCAGGAACAGCCACACCAAGGCACTTTACCTCCTGGAGACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types