BtaINT0067844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015286 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr11:95896823-95897610:-
Coord C1 exon
chr11:95897482-95897610
Coord A exon
chr11:95896993-95897481
Coord C2 exon
chr11:95896823-95896992
Length
489 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGC
5' ss Score
6.85
3' ss Seq
ACTTTGTGTCTTTGTATCAGCTT
3' ss Score
7.37
Exon sequences
Seq C1 exon
GATAAAAGGTTTCTGACAGCTCAGTTACAGGAAATGAAGAACCAGAGTTTGAATCTTTTCCAAAGAAGAGATGAAATGGATGAATTAGAGGGATTCCAGCAACAGGAACTGAGTAAAGTAAAGCACATG
Seq A exon
GTGCGCATTTTTGTCTTAGAAGCTACATCCTCAGATGATTAGTTACTCTGACTTTGCTAGTCATGACTCTAACTGCTGATAAATGTACCTTAGTTGTCTTTGATATTTATCATATTTGTATGTCTTTCAATTTATTAAAATGGAGAAGTTCTGTTTGATATGTCTTTCCTTTTTCTTTTTAAACTACTGGGCCTATAAGATCCCTTCTAAGCTCACAAAAATGTTATAAAAACTTGCCTTACTGGTCCAGATTTTTTTTAATTTCAATTTTTATTTATTTATTTGGCCACGCTGGGTCTTAGCTGTGGCTTGTGAACTCTTAGTTGCTTCATGTGGGATCTAATTCCCTGACCAAGGATCGAACCTGGATGCCCTGTGTAGGAAGCGCAGTCTTAGCCTCTGGACCACCAGGGAAGTCCGTGGTCCAGATTTTTTTTGCAAGGGTATTTCTTAGTAGTAGCCCAGTGAAACTTTGTGTCTTTGTATCAG
Seq C2 exon
CTTTTAAAAAAAGAAGAAAGCTTGGGGAAAATGGAGCAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGCACCCAGGAGGAATTGGTGACTTCCAGTCAGATTTCGTTAGACTTAAGCCAGAAGCTGGAAGAACTGCAGAGACACTACTCAGCGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015286:ENSBTAT00000020327:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.491
Domain overlap (PFAM):
C1:
PF0026115=Tropomyosin=PU(21.8=55.8)
A:
NA
C2:
PF0026115=Tropomyosin=FE(50.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAAAGGTTTCTGACAGCTCAGT
R:
CTCTTCCAGCGCTGAGTAGTG
Band lengths:
294-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development