GgaINT0126271 @ galGal4
Intron Retention
Gene
ENSGALG00000001025 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr17:9567778-9568365:+
Coord C1 exon
chr17:9567778-9567906
Coord A exon
chr17:9567907-9568195
Coord C2 exon
chr17:9568196-9568365
Length
289 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
GCTCATGTTCTGGTATTCAGCTT
3' ss Score
4.2
Exon sequences
Seq C1 exon
GAAAAAAAAATGCTCGAAACACAGTTACAAGAAATGAGGGAGCGGAGCTTGAATCTTTTTCAAAAGAGAGATGAAATTGATGAACTGGAAGGCTTTCAACAGCAGGAAATGGCCAAAGTTAAACACATG
Seq A exon
GTAACATTATTTTAAATATGACTCTTTTTTCTAAAATTTCTGTTAGAACACCCAGTGGAAGTACTGCATTAATATTTTTTAGCCTTAATGCTTGTGACCAGCTTGATTCCATGTCCAAATCCTATAAGTAGGTACATACGTGCAGGATTGCACAGAGTATTTCAATGGAGGCTTTTCTAGGGGTTATTTCACTTAATTCAACTCATAACTTAGTCAGGGCGACAATTGGTAATACTGATAGAGTCTGCTCATTCCAATTCATATTTATTGCTCATGTTCTGGTATTCAG
Seq C2 exon
CTTTTGAAAAAAGAAGAATGTCTAAGCAAAGCAGAGCAGGAACTAGAGGCACGCACTCGAGAACTAATCCATGCTAAGGAGATGCTTCAGGAAGCGAGCACCGAGTCATCAGGCCTGCGGAAAGATCTTCATGAGTTGCAGGAGCAGTTCTTGGAGGTGGAGGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001025:ENSGALT00000001514:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCTCGAAACACAGTTACAAGA
R:
CTCCGTGCCTCCACCTCC
Band lengths:
292-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]