DreINT0073765 @ danRer10
Intron Retention
Gene
ENSDARG00000008979 | golga1
Description
golgin A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1237]
Coordinates
chr8:41491525-41493860:-
Coord C1 exon
chr8:41493732-41493860
Coord A exon
chr8:41491695-41493731
Coord C2 exon
chr8:41491525-41491694
Length
2037 bp
Sequences
Splice sites
5' ss Seq
ATGGTACTT
5' ss Score
5.19
3' ss Seq
AGTGCTCATTTTTCCTGCAGCTG
3' ss Score
9.63
Exon sequences
Seq C1 exon
GAGAAGTTGTCTTTGACTTCTCGGCTAGACGAAATGACAGAGCAGAGTTTAAGTCTGTTCCAGAAGAGAGACGACCTGGATGAGCTAGAGGGCTTTCAGCAGCAGGAACTGGCTAAAGTCAAACACATG
Seq A exon
GTACTTTTTTGTTTTGAGTTTTCTATGCTTAGGATTTTCTGTCCTGTGATGATTTATTTATTTATTTTATTTTTTACATTTGATTAATATATATTGATAATTGATTAGTATAAATTAGTGATTGATTAAGGTTTTGCTAAAGTGATGATCAAATGCATTATAATCATTGGAATATTACAGCACACCTCATGAAGCGGAAAAGGCTTTTATACTATACGCGCTCACCGTAGTGAAAGAAAATCCACTCTAAAATCAGACGGATAAACAGAGAAGTAGAAAGTAATTTTTTTTAGTAATTATTATAAAAAATTATATGGATTTTTATAACCATTCAAGATTTTTTTAAACAAACTTTGACACATCACTTACTTTTGTTCATATTTCGGACAATTTTTCCTATTAAAGTTTATTCAACTATCAATGACAACAGAACATGCGTTCCTCTATGAATATATATATTATTTTTTTGCAAGAATAAAAAAAAAAAAACATCTGTATTTTTTAGTAAGTTTACTTACTAAAAAATACAGAATTATTATTATTATTATTTATTTTTTTTTTTTTTTAGATTTAGCCCGCTCCACAAATTACACGTTTCTGTCCTCTACTTATATGCTATAAAGGCAATAATGGTCCAATATTCCTGATCGTTATAACCAGTAAAGCATAGAAAAATCATATTATGTTTCTATAAAACATATCCAAATGTTTTCGGCTGTCTGCACCACTCGCTTATGGTGACTCACGCTCTGCACAGCCTCTGCAGCTCATACTGAATTAAACAGACGCACGTCACTTCATAGCTATAACGGCCGTTTTTTGACTCGACTAAATTTATTTTTATGTCTTGATCACACTATTTGGAGGGCCAGAACAAATTGCCTCGGAGGCCGGGTTCAATTAAAATAGCCCTGACATAGGCTATTTTATATACATATATAAAATGCTTTGGCATTCAAGTTTGCTTTGAACTTGAAAGAGAGAGAGGAGCAGATTTTAAAATATTAGATCAGTGGGTGCTCATAGCTCCTGAATAGCATAAAAGTAACAGAAATAGTAGATGTCTTTTTTTTTACATTAACCCATTGAAAAGAAACTGTGAATAACAGCGTCATAATAATAATTAAAAAAAAAAGATTATTGAAAGTTAAATTATGTTTTGTTTGTCGCATATAGTTAACTATTTAGGACATGTGGGTAAATGGTGTGTTTCAATCCGGCCACCACTGCAAGTATATTTCAAACCTGTGGGAAGCACTGCGATGTAATAATAGTACTGAAATGTTTAAGGCAGGCATGTCCAAACTCGGTCCCGCAGGACCAGTGTCCTGCAAAGTTTAGTTCCAACCCCAATCAAACACACCTGGGCCAGCTAATCAAACTTTTACTAGGCTTTCTAGAACCATCCTTGCAGGTGTGTTGAGGCAAGTTGGAGCTAAAATCTGCAGGACACCAGCCCTCCAGGGCCGAGTTTGGACACCCCTGATTTAAGGCATATTAAAAACAACATAACAGCATTTCAGATGTTTTACCATGTGGTCAACTCACTAATTTGTTCAATAATGTGGTCCATTTCACCTATTTTTATCATCACTAGATCACTTAAACGACTTTTTTAATGCAAATACTGAAGTTTATTTTGTTAAAGGGTTTCCATAGTAGTTTATGCACATTATGCACATTTCCATCAAGCATTTTTATGCAATAATGCAAAATTTGTATAAAAATAGCTATATGGAAACATACCATTCGTCTTCAAAAATGTCTGTCAGCCTAAAAATCCTCATCTGTATGTAAACTGATTATTCTCTGAAGAATTAAAGCAGTTAAAAGACAAGCTTTGTTTAACTTTATACAATATCAGACAAATATCTTCCTTGAAAACAGCAATGAAACAATTTGCCATTCCAGTCCAATTCAGCCATGAATCTGATAACATGCCAAGTCAAAATACTCAGTAGCTGATATACATTGCAAAACAGAACTACCTCTTTACAGATTAAGTGACCTGATTGTAAGTGCTCATTTTTCCTGCAG
Seq C2 exon
CTGCTGAGGCGAGAGGAACAGCTTAATCAGCGGGAGAAAGAGCTGAAACTGAGAGGAGAAGAGCTGAACACAGCCAGACTGACCCTGGGCAAAACGCAAGACAAGCTGTATGAGCTGGGAGAAGAACACGAGGAGATATGCAGGACCAACTCACAGCTACAGGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008979:ENSDART00000098578:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.481 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]