HsaINT0070381 @ hg38
Intron Retention
Gene
ENSG00000136935 | GOLGA1
Description
golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
Coordinates
chr9:124921723-124923223:-
Coord C1 exon
chr9:124923095-124923223
Coord A exon
chr9:124921893-124923094
Coord C2 exon
chr9:124921723-124921892
Length
1202 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGC
5' ss Score
7.14
3' ss Seq
ACTTTGTATTTTTGTGTCAGCTT
3' ss Score
6.26
Exon sequences
Seq C1 exon
GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG
Seq A exon
GTATGCATTTTTGTTTTAGTAGCTAAATACTGAATAGATGATTATTCACTCTGATTTTACTAGTCATCACTCTCTAATTGCTGATAAACATACACCAGTAATATGTGATATTAATCATATTTGATATTAATCATATTTGTATGTTTTTAAATTTATTAAAATAGAAAAGTTCTGTTTAAAATGTTCTTTTTCTGTTTTGTTTTGGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTAACTACTGGGTATATAAATTCTCTTATAAGCCCACAAAAATGTTATAGAAATTTGGCTATTGGTCCACATTTTTTTTTTTAAATAGATGGAGTCTCACGGTGTTGCCCAGGCTGGAGTATAATGGCTACTCACAGGTGCGATCATAGCACACTGCAGCCTCAAATTCGTGGGCTCAAGCTGTCCTCCCACTTTAGCCTCCCAAGTAACTGGAACTGTAAGCATGTACTGTAGGTGTGTGCCACCATGCCTGACAAGCTTAGATTTTTTTTTTTCTTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCATGATCATGGCCCACTGCAGCCTCGACCTCCCAGACTCAAGGGATTCTTCCACCTAAGCCTCCCGAGTAGCTGGGACTACAGGCGCACTACCATGCCCGGCTAATTTTTGTATTTTTTGTAGAGGTGGTGTTTCGCCATGTTACCCAGGCTGCTCTCAAACTCCTGGGCTTAAACGATATGCATGCCTCAACCTCCCAAAATGGTGGGATTACAGGCGTGAGCCACCGTATCCAGCCGAGATTTAAGTGTATTTTTCTTTTTTACTTCTTTTTTTTTTTTGAGATGGAGCCTAGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTAATTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCCGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCGGCTAATGTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTCAGCAAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCAGCATGCCTGATCTTAAGTGTATTTTTCTTAGCATAGCCCAATGAAACTTTGTATTTTTGTGTCAG
Seq C2 exon
CTTTTAAAAAAAGAAGAAAGTCTAGGGAAAATGGAACAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGTACCCAGGAGGAGTTGATGAACTCCAATCAGATGTCATCAGACTTAAGCCAGAAGCTAGAAGAATTGCAGAGACACTACTCAACGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136935:ENST00000373555:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.843
Domain overlap (PFAM):
C1:
PF075369=HWE_HK=PU(11.4=18.2)
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(15.4=95.0),PF045827=Reo_sigmaC=PU(12.8=95.0),PF048597=DUF641=PU(19.6=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAATATTCTGACAGCCCAGT
R:
GCTCTTCCAGCGTTGAGTAGT
Band lengths:
294-1496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development