MmuINT0072151 @ mm10
Intron Retention
Gene
ENSMUSG00000026754 | Golga1
Description
golgi autoantigen, golgin subfamily a, 1 [Source:MGI Symbol;Acc:MGI:1924149]
Coordinates
chr2:39047597-39048438:-
Coord C1 exon
chr2:39048310-39048438
Coord A exon
chr2:39047767-39048309
Coord C2 exon
chr2:39047597-39047766
Length
543 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
ACATTATGTCTTCTTACCAGCTT
3' ss Score
7.07
Exon sequences
Seq C1 exon
GATAAAAGGTTTCTAACATCTCAGCTGCAAGAAGTAAAGAACCAGAGCTTGAGCCTTTTTCAAAAAAGAGATGAAATTGATGAATTAGAGGGGTTCCAGCAGCAGGAAATCAGCAAAGTAAAACACATG
Seq A exon
GTACGTGTTTCAGTTTTAGAAGTTCAGTAACAGTACCAATGAGCAGTGAGCCTTTATGATCATCACTTGCAAGACTGTAAATACCCTCATAGTCTTTGTTATTATTAACAACATTAAAATGTTTCAGGTTTATTAAAAGTGGACAAGTTCTATTTGAAATGTATCTTTTTTACCTGTTTTTTTAAGGACTACACATTCAGCCTAATTCTCATCCCACAAATATGTCATTCTCTTTTTTCTTTCTGTGGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTTTCGGGGGTGGTGGGGAACAAGCACATGCCACAGCTTGTGTATGGTCAGAGGACAACTTTCAGGAATCCATTCTCTCCTTACAGCATGGAATCCAGGGATTGAATTCAGGTAGAAAAGCTTGTGAAGCAAGTTCCTTTACCCACTGAGTCATTTCAGTGGTCTGACTATCTGTTTAAAGTATGTTTTTTAGCAGTGGCCTAATGGGACATTATGTCTTCTTACCAG
Seq C2 exon
CTTTTAAAAAAAGAAGAATGCTTGGGGAAGATGGAGCAAGAATTGGATGCACGAACCAGGGAACTTAACCGTACTCAGGAGGAGTTGGTGACTTCTAATCAGTTGTCATCTGACTTAAACGAGCGGCTAGAAGAATTGCAGAGACACTGCTCAACGCTGGAAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026754:ENSMUST00000039165:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.601
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(32.8=100)
A:
NA
C2:
PF086476=BRE1=PU(44.4=56.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAAAGGTTTCTAACATCTCAGCT
R:
CAGTGTCTCTGCAATTCTTCTAGC
Band lengths:
278-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types