HsaINT0070381 @ hg19

Intron Retention

Gene

ENSG00000136935 | GOLGA1

Description

golgin A1 [Source:HGNC Symbol;Acc:4424]

Coordinates

chr9:127684002-127685502:-

Coord C1 exon

chr9:127685374-127685502

Coord A exon

chr9:127684172-127685373

Coord C2 exon

chr9:127684002-127684171

Length

1202 bp

Sequences

Splice sites

5' ss Seq

ATGGTATGC

5' ss Score

7.14

3' ss Seq

ACTTTGTATTTTTGTGTCAGCTT

3' ss Score

6.26

Exon sequences

Seq C1 exon

GAGAAAAATATTCTGACAGCCCAGTTACAGGAAATGAAGAACCAGAGTATGAATCTTTTCCAAAGGAGAGATGAAATGGATGAATTAGAGGGGTTCCAGCAGCAGGAACTAAGTAAAATAAAGCACATG

Seq A exon

GTATGCATTTTTGTTTTAGTAGCTAAATACTGAATAGATGATTATTCACTCTGATTTTACTAGTCATCACTCTCTAATTGCTGATAAACATACACCAGTAATATGTGATATTAATCATATTTGATATTAATCATATTTGTATGTTTTTAAATTTATTAAAATAGAAAAGTTCTGTTTAAAATGTTCTTTTTCTGTTTTGTTTTGGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTAACTACTGGGTATATAAATTCTCTTATAAGCCCACAAAAATGTTATAGAAATTTGGCTATTGGTCCACATTTTTTTTTTTAAATAGATGGAGTCTCACGGTGTTGCCCAGGCTGGAGTATAATGGCTACTCACAGGTGCGATCATAGCACACTGCAGCCTCAAATTCGTGGGCTCAAGCTGTCCTCCCACTTTAGCCTCCCAAGTAACTGGAACTGTAAGCATGTACTGTAGGTGTGTGCCACCATGCCTGACAAGCTTAGATTTTTTTTTTTCTTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTGAGATAGAGTCTCACTCTGTCACCCAAGCTGGAGTGCAGTGGCATGATCATGGCCCACTGCAGCCTCGACCTCCCAGACTCAAGGGATTCTTCCACCTAAGCCTCCCGAGTAGCTGGGACTACAGGCGCACTACCATGCCCGGCTAATTTTTGTATTTTTTGTAGAGGTGGTGTTTCGCCATGTTACCCAGGCTGCTCTCAAACTCCTGGGCTTAAACGATATGCATGCCTCAACCTCCCAAAATGGTGGGATTACAGGCGTGAGCCACCGTATCCAGCCGAGATTTAAGTGTATTTTTCTTTTTTACTTCTTTTTTTTTTTTGAGATGGAGCCTAGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTTGGCTAATTGCAACCTCCACCTCCCGGGTTCAAGTGATTCTCCCGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCGGCTAATGTTTGTATTTTTAGTAGAGATAGGGTTTTGCCATGTCAGCAAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCAGCATGCCTGATCTTAAGTGTATTTTTCTTAGCATAGCCCAATGAAACTTTGTATTTTTGTGTCAG

Seq C2 exon

CTTTTAAAAAAAGAAGAAAGTCTAGGGAAAATGGAACAAGAATTGGAGGCACGAACCAGAGAACTTAGTCGTACCCAGGAGGAGTTGATGAACTCCAATCAGATGTCATCAGACTTAAGCCAGAAGCTAGAAGAATTGCAGAGACACTACTCAACGCTGGAAGAGCAGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000136935-GOLGA1:NM_002077:8

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.651 A=NA C2=0.860

Domain overlap (PFAM):

C1:

PF120723=DUF3552=FE(41.3=100),PF083176=Spc7=FE(31.9=100),PF075369=HWE_HK=PU(11.4=18.2)

A:

NA

C2:

PF104734=CENP-F_leu_zip=PU(15.4=95.0),PF078886=CALCOCO1=PU(13.0=95.0),PF0157614=Myosin_tail_1=PU(12.9=90.0),PF083176=Spc7=PU(12.7=95.0),PF048597=DUF641=PU(19.6=90.0),PF045827=Reo_sigmaC=PU(12.8=95.0)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000362656