BtaINT0068502 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021636 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:22378457-22382494:+
Coord C1 exon
chr2:22378457-22378667
Coord A exon
chr2:22378668-22382389
Coord C2 exon
chr2:22382390-22382494
Length
3722 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
CCTATATTTTATCTATATAGGTT
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATGATCATCACAGCAGTTACCCTGTTCTGCAGCATTGTGATAGCTGGCATATCACTCATGTGTATGAACCGCACCTCCCAAGCAGGACGCTATGAAGGTTTCGACCAGTCTCAGGACCGCAAAGCAGCAGAGCCAGGAAACACTGCTTTCGAGGACAGTCCAGTGCCAGTAAATGAACCCGAATCTTTTACAAGTTCTGTCCCAGAAACAA
Seq A exon
GTATGATCCTTAAATATAAAGAAACTTTTATATGCCTATATAGCATGTACTCTAAATGTTTTGTGTAAGGGAACTTCCTTGAATTATCTTCAATATCACAAGTATTTGTAAAATGGGGAACTTGAATCATAGTCAATAATAGAAAGAGCTTACAAGTTCATTTATTAGATTCTTGTTTATAAATCTTTTATGAGGATAATCTTCTGTGAGAATAAGTCTAATCCTCAGACTTCTTTGGGCCTGAGAGTTTAGAGAAGAGTAACAACTTCGGGAAGGCTCTTTCTAGGAAACAAAACATCTATGTTTATTAACAACAATGCATCAAGTAAGCACCATCAATAAAATGAACTAAAGAGGCTTAATTGAAGCAGGGCTAATGGTAAAAGTTAGGAGTTGGCATACTGCAGTCTGCCACCTGTTTATGGCCCCAAACCTAAGAATAGCTTCTATGTTTTTAAAGGGTTGAAGGAAAAATTTTAAAAGACAAATATTTTATGACACTTGAAAGTTATATGAAATTCAAATTTGTGTCCATCACATGTTATTGAAACACAGACATGCTCATTTACTTCTGCATTGTCTGTGGATGTTTTCATGCTGTATTGGCAGAGTTGAGTCATTCAACAGACACCCAGTGGACTGCAAAGCCTAAAATGTTTATTTATAGTGAACATATGTCCCTGTGTGAAAATATGACCCTAACCAGTGACATTGTTAATGTGCTAACAGTTGTATGGGGTTTGCCTCAATTCATGAAGGGAATTCAGCAATGGAGCCTGCATTTTGGATTCATTGGTGCATGCAGAGATTTCATAGACATCGACCGTTGTGCTGGGAAATGTAAACGATGGCCTCTATTTTTTTAGAGAGTTTGTAGAGTAGAGCGATACCTGATCTTAAAACTATTAGTTGTAAATAGCGATAAGTAGAGAAGAAAGAGAAAAAAGAAAAGGTTTAAAATTCATTTTAACTGTCTTAAAAGGAAGAGGATCCCATAAATCTCACTGCTTATATTGCCTGCCTCCCTCCCTCCCATCTTTCATCATCCCAAACTGGAAGGAGATAGGACCGGGGGTAGAAACAGGGATATGGAACCAGCCTGCCTAGGTTCAAGTCTGACTCTAGAACTTTATTATTTGGTCATAGGCAAGTTTCCCGTGCCTTGGTTTCTATATCTGATGCTGATAACACCTGCTACACAGGACTGTGGGGTCCCACTACATAGGGCTGTGTTTGGCCAACAAGTGATTTACATCAACCCTGCTTCAATCAGGCCTCCTTTAGTTCATTTTATTGGTGGTGTTCACTAATTTCTTTGTTAGATCCTTTGTGATTATAGCATCAGAATTTCATTCTTTTGAGTCCTCTTGACTATTTTCCATTTGAAAATGGAAATTTAAGGATTATGTGTATGTGTTCACTAAAATTTTAAAAGCCATTTCTCTGACATCTAGAGTACTTTTCTGAACATGCCCAGCATCCTTTCCTTCCTTGCATTCTTTGTGGACTCTAAACGTTTATCCTATAAATCAATCTACTGTATGTTTTCAGATAGGTTGTAAAGACCATTCAGCACTCTCTAAGTCTTCTTCTCCTGCGAGTGTTTTAGAACTGTCCACCAAAGCCCTGAGAACGTGTGCAGAGATTCCTACACTAAGTGTCTTAACCCCAGAGACTTTTGCTGCTGTCTTTACTGTCCTTTAAAAATAGCAAATAAACAGTATCATAGATATTCTTTAAACCCTGTCATCATCACCTCCAGCAGGATAACTAGCTGGCACCTTTTGTATAAATAAGTAGAGAATCAGAAGACAGTTATGGCTTATCTCAATAGAAAACCTTCTGTGATGTTTATACCTCTCCTCTTACCTCACTGCTTTATAATTGCTTTTTAAATTATCAGTATAACCCACTAGACTATAAGTGCTGTGACTGACTTGCCCACCATTGTAGCCTCAGCACCTAGCATGGTGTCAGGTTTCCTATATATGTTTAGTAATATTTGTTAGATGAATGGATAGATGGATGGGCTGATAAGCTATGACGTGATTTTCTGAAGCTGCCTGAAAATTGCTAAGGCAAAGTTCTTGTTTATTTGCCTATTCACCCATGTTCCTAGGAAAAGGGTTTTTAAACCTGTCTGGTTATTTTCCTTCCCTACGGTCTGCTCTTTTCTGCTTTGCTAATAGTATTAATACATAGCACATTAGATGTCCAGCCTGGCCTCCCCTAATCTCAGAATCCAAAATAGTTCACTCCCCTCTGCCCCTCGCTACACATTTGTCAGAGACACGTGACTTGCTTATAAGTATGGAATTATAATTGAAAGGAAAATTAACCTACTTTAATATGAGATCAAAGGTTCAGTTAATAAAAGAGAAGGCAATATCATCTCTCTTATATGTGGAATCTTTGCAGGGTGGGGAAAGCTCATAGATACTGAGAACAGGATTGATAGTTGCCAGAGGTGGGGAGTAGAGCATAGGAGAAATGCTCTATGAAGGAGGTCAAAGGGTAGAATGAAAAGATAATAAGTGTGGTGTATTACTGAGCAACAAACACACACACACACACACATAAATAAGAAGGCTCATGTTTGAAGGGGAAAACTGCTATATGTGTATGTTCCCTACACATATGTCCTTGGAATGGGCTGGCTTTATATCTGTTTTGTTAACAATTTATCTTAGTGGATTTAAGCCGTCAAGTTCTGAAGATAAGAGGCAGAGCCAGATGTTTTCTTTTCAATTATTCTGTGGCATCATTATCTTAAATTTAGAAAGACATTTGTAATAGTTTTATTATAGATGATTGTTTTTATACTTTGAAATCTTTTTTTTATTTTTAATGACACTACTGAAAAATTAGAGCGTATTATCAGTGAACGTTTCAGCCTATGAATTAAGCTTTTTAGTACATTAAGCTCTAATACAGTTTATCACTGAAGTTATTCTATTACAATCCATATCAAGGAGCACCGTGTCCATGTCTGAGTGTGATGTTTTAAAGGACACTATGCAGTTCTCTGAATATACAGAGTAAAATTACAGCTCTATGGTAGGTGTCTCAGTGTGACTTCTATAAACCAATCTACCTAAAAACCAGCAAGAGAGTTTCAGCAGCCTATATCTAAAAATAAAAAAGAATACAATTGCTTTTACTGCATCTTCTAAACTGGTAGAAGACATGTTCTTGAAAGAAGTGAGTTTTGAGCTAAACTTAGAAGAGAAGAGGGTTTGGATGAATTCTGTGTCAAACTAGAATTCATCCAAGGAGTAGTGAAATCAAAGCTGTATTTTAGGAAAGTGGTCAAATTCTTATTTCCCAAAACACACTGGAAACTAATAACATAGCATGGATAAAAACGTCTTCCTTAAAAAAATTTAATTAATTATGGGAATTCCCTGGTGTTCCAAAGATAACAGCTGGAGAACAAACAAAAACATTTTCTTTGTCTTATACAAAGAAGAGGCAGTATGTAAAGGGGCTGATCCTTTGTCTGACACTCCTTAAATGTTAATTTATACATAAGCACATTTAAATACTTTTTGATAGTTACCCATACATTGAGGCTGTATGGAAAATCTCTGTGTGTATATAAATGAATTCGGGGATTTGTTTTTTTTTTTTGGGGGGGGGGTTGTTTTATTTGGCATCTCTTTACATTGTCCATTTTTTTGTGATTGGACTCTCCCATCACAACCTATATTTTATCTATATAG
Seq C2 exon
GTTGCTGCTCCTGCTCTATGGGAAATGGTGAATTATGCTGCCCATCCACGGAGCCAGTAGCAGACATAACCACCAGTGGGTCTGTGACTCCTTCATTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021636:ENSBTAT00000028831:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF152421=FAM53=FE(50.4=100)
A:
NA
C2:
PF152421=FAM53=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]