GgaINT0049029 @ galGal3
Intron Retention
Gene
ENSGALG00000014209 | GPR155
Description
NA
Coordinates
chr7:18091820-18092511:+
Coord C1 exon
chr7:18091820-18091898
Coord A exon
chr7:18091899-18092409
Coord C2 exon
chr7:18092410-18092511
Length
511 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
CTATCCTATTATGCTTATAGGTT
3' ss Score
7.58
Exon sequences
Seq C1 exon
CCTTCTGCAGGGTCTTCTGCGCAACCTTCTCCCGCACAACCTTCTGCAGGTTGTTCTGCACAGCTGTCTGCAGAAAGAG
Seq A exon
GTATAGAAAGTAGCTTTGTAAAAACAAATAAACAGCTTGGGATACAAAAACTAACAAAACTGTTCCAAATTCTGACCTGGGAGGGATTGTTGTTTAAAACTTCAAATGTGAAGTTAGTGAGAAAGAAAAATCTAGATATAGGTGCCCAAGGACTTAGGTTTATATTTCTAGGGAAGGTAAGTGTCACAGGTTATTTATTCAATAAACTGTCTCTCTGAGATGAGTTATAGGCGTACAACGTTGCTACTCCTTGTTTGACTTTGGCTTTCTTACTTCCTCTGTGTTTTTCTTCTACCTAAAAGCACCCGTGTTGCTTCCATCGTGGTAGTGCTATGTTGAATATTTCTTTGTATTTGTAATATAATGCATATACTCCCTCAGCAAATTGCAACAATTGTCTGCGTTCCTCTTTTAGATTATTTGTGAATATACTGGAGTATAGCATATAGTGTCATACTTGGAAAGTAAATTGTGGTGGTGAAAGAAACTAACTATCCTATTATGCTTATAG
Seq C2 exon
GTTGCTGTTCTTGTCAAGCAGCAAATGAGGAAATATCCTGTGCTAAGGACGGCAAAGCAGTGCCAAATGCTGCTGAAAACAAGGTTCCTTCAATTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209:ENSGALT00000022979:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]