MmuINT0073077 @ mm9
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73194655-73200692:-
Coord C1 exon
chr2:73200482-73200692
Coord A exon
chr2:73194760-73200481
Coord C2 exon
chr2:73194655-73194759
Length
5722 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
ATTCTATTTCATCTTTCTAGGTT
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATGATCACCACGGCAGTCACCCTGTTCTGCAGCATTCTCATAGCTGGGGTGTCACTCATGTGCATGAACCGCACCACCCAAGCTGGTCACTACGAAGGTTTCGGCCAGTCTCAGAACCACAAACCAGTAGAGCCTGGAAGCACTGCGTTTGAGGAGAACCCAGCACCAACAAATGAACCAGAACTCTTCCCAAGTTCTATCCCAGAAACAA
Seq A exon
GTATGAGCCCTACATGTATTTTAAAACTTACAGAAACTGTCACATGTATCTTAGATGTTTTTGTTCAGTGGAAAGTCATTACACTGCTCTAAATAATCTCGGCATTTGTCAAGGGAGCAACTTGAATAATTCTATTAGAGCTTCATTTTTCTAGCACTTCATTCATTGAGCTGAGATGAATGTTTTGTTGAATTCTAAGACTTCCAAGAGAGGCTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGATGGATGGATGGATGGATGGTTGAAGCAGGGTCTTATTCTGAAACCCAGGCTGGCCTCAAACTGTTGGTCATCCTGCTTAAGCTTCCTGAGTGCTGGGATTACAGACATGAGCCACCATGCTAGTTTTCAGTGCTGGGGATTGAACCCCAAACTTCACACACACTCAGGAAATATTCTACCTCGAAGCCATATCCCCAGCTTTGACCTGAGAATTTTAGAAGTAAAAGAAAAGGAACATCCTTGCTATGAAACTAAACACATTCATTTCCTACTTTAACAATATTTTATCAGGCAGGTGTCATCAATAAAATGAGTTTTAAGGAGAGACTTGACTTAAGTAAGACTAATCATATAAATTATCCATCTACAGACTATAGCCCAGAAGCCAAATCAGTCTTTCCAACTGATTTTGTGTAGTTTCTCAGCTAAGAAGTTATGTTGTTGTTTTGTTTGTTCTTTTGTTTTTGTACATTTTTTAAAAGATTGATATCAACATAAGATTTTTTTTTCCATTTTTTATTATGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTAAAATCTTGCTAGTGTATGCAAAAGATTTTTTTTTTTATGACTCTTAAAAGTTCTATGAAACTTGAATTTCCTGTCTAAAATGTTGTGGAACATAGTCACACCGATTCACTTATGTGTTGTCAGTAGCTGTGTTCATGCCGGAGTGGCAGAGGTGAATCATTGCTGCAGAGCCCGAATGGGGCCCCTACTGCAGTGAAAACCTGCTCGGGTATTTCATTTTACAGCTATAGTCCATCAGCAAGAACCTAAGGCAGAAGCTGATGTCAGGGAGCTGGAAGAGTGCTGCTCTCTGGCTTGCTCCTCATGGTTTGCTCACCTTACACTTTTACAGCACCCGGGGCCACCAGCCCAGGGATGGTACCAGGGATGGCACCACCAACAGTGAGCTAGGCCTTCCCACATTTAATCATCAATCAAAAAAATGATCTCCAGGCTTGCCCATAGGCCCATAGGCCAGTCTGGTGGGAACATTTTCTCTCTCAACTGAAGTTCTCTTATCTCTAGCTGGTGACAAGTTAACACAAAACTGGCTGGCATGACTGACTCCTTGTCACCTTGACACACAACCACATCACTGTTAAAAAAAAAACACCTCTTCTTTATTATCCATTTCCAAGATCTTATATTAGTATTAATATCACAATATAAAACATTCCAATTTTAAAAGCCCCCACGGTTTTTAATAATTAAAATACTTTAAAAGTTCAGTCTTGGAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAATCAGTCTTTTTAAAAATTGTCTCTCTAAAATAACAAACTTTCTTAACTGTGAGCTTCTGTAAAATTAAAAGTAAACTAAATACTTTGTTACTCCGAGAGAACCAGGTCACAGTCACATTTAGACCAAAGAAAAACCAAAGTCCAACTATGTCAAGCATTTAGGCCTCACGCTCTGGGCTCCAAAGGGCTTGCCCACAGCACACCCAGCTTATCTCCTAGGTCCAGGCCAGCTCCATTCCACAGCTGCTGTCCTCAGTGGCCATCCCATGGTACTGGCATCTCTAAAATGATAGGGTCTCTACTGTACCGGGGTTTCACTTTTACCAATAGCCTCTCCCAAGCCCTCTTTATGGACTCTGACCCTGAAGAGTGATACGGTACCAAGCCTCAACTTCTCTCTATGACTCCTTCAGTCTTGGAGCTTCCGCTTCAGCTGAGGCCACACATTCACCAAAGGTCTCACTGGCCTCTCACAGCACCACCTCAGCTGCTCTCCATGGCCCCTTCATGCCTTTAAAACCAGCACCTGGACGACTTTACACATCACCATGTTCATTCATTCACTGGTGAATGAATGCCAAGTCCAGACTTGATGACCTCTGGGCCACAGCTTCTGTGTGCTGGTCCTGAGGAAACACTTACCAGAAGATTTAACTTCAGGGATTCTGGTCTCTTCTTAACCGCAGATCATTTCTCAGACCCAGTTGGCCAACATCAGTTGTTCCAGGAAAGCAAAGGTTTCACTCAGTGGTCCTGGTCTCTTGTTAATCACAGCTGATTCTTCAGCCCCAGCTGCCCAGAACCACAGATTCTTAATTCAAAATATTAAATGGCCCCATTGGTCTGAAACTTTTCATCAGTACCTCACACACCAGACCTCCATTATCTGGAGGCCTCAGCAATCATTTGCTCTCAGAACTGTTTTCTAAGTTCCCACAGAACAGCCTACTGATCTCTGAGCACTGAATGGCTTTTCCATCCCCAAATTCCAAAACCCTTTCACAATCCTCCCCAAAACATGTCAGGGCCTGTCGCAGCAATACCCCATGAACCTGGTCCCAATTTCTGTCTTAATTAGGGTTATCATTGCTGTGATGAAACACCATGACCAAAAATAACTTGGAGAGGAAAGAATTTATTTCATCTTCTAGTTTATAGTTCATTATCCAGGGAAGTGAGGGCAGGAGCTGATGCAGAGGCCATGGAAGACGGCTGCTTACTGGCTTGCTCCTCGTCGTTTGTTCAGCCTGCTTTTTTACAGCACCCAGGACTCCCTGCCCAGGGGTAGCCCTACCCACCGTGGGTAGATAGCTAGCAATTTATTCATCTGTTTCTTTACTGAGAGACATTTGATTTGCTTGAAACACATCTGTTAGAAGTAGTGCAGCAGTGAACATCTGTATTCATATACGCTTGAGGACTGGTCTTAAGATCGTATTTGTGAGTCATTGGAAATATAACCGCTCATGCAAACCCACTTATGTGGGTCTGGTTCCAGATTTCCTTGGCTTTTAAGTATATTGCTGGAATCTCCTTTTGAATATAGAGGCAGCATTTTTTAATTTTCAGACATACTGTTCCTGTCTCAGTTTCTCAGGATTTCTAACAAACCTCACTGATTTCCTCCTCAAGTGAAAGAGTCATTTAGAGCAAGTAGTTCTTCCTCCGTGGGGTCCGGTGTCTACCCCGGCCTCTATTTCCAGTGTCTGCTAGATTCTTATAATTCCTTTCTAACTGGACCCTTTCCCCCACCTCCCATCATTCTGGGTCCAGTCTAGCTGATGTGAAATGGCCAAGCCAACCTTCCTCTCGAGCTTCTTCCACATCAAACTCCTGCTGTAGTTCAGGTTGAGACCCTCAAGTCCCTCCAGTACCTGATAATTCCTGCTCAATCCGGTTCTTCCTTCTCTCCCTGTGAACACTACCAACTTCTTCGTGCTTTTCCCCAGACTGGCCCTTGTGTCCTCTCTCTCCTTCCTGCTTTTACTGCATAGCCCTTAAACCCAGGCTCACTGACAATCTGTGGTGATGTCATCAGAATTTTATTCTTCCAAGCCTCTTGATGATGTTCCTTTTAAAATTGATTGTCTTAGTTGGGTTTTACTGCTGTGGACAGACACCATGACCAAGGCAAGTCTTACAAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCGTCAAAGTGGGAACATGGCAGCATCCAAGCAGGCATGGTGCAGGAGGAGCTGAGAATTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCTAGGCAGCTATGATGAGGGTCTTAGAGCCCACACCCACAGTGACACACCTACTCCAACAGGGCCACACTTCCTAATAGTGCCACTCTCTGGGCTGAGCATCTATAAACCATCACACTGAAAAACTGTAAAACAGTTTCTTTTCTTTTTTTTTTTTTTTTTACAGAGGCCATATTGCTTATTTGTGTGTGTGTGTGTGTGCTCATTTTCTATAGATAAGCCATTGTAATAGCCTCATGTGTTTTCTTAATTTTTACATCTTTTTTATGTAATTTTACTATTTAAACCTTCATGTTTCTGGAGAGCTAGGCTAGATAGTTTATTTTCTCTTCTGTTATTCTGTGGTTCTCTTTCTAACCTTGAGGTGGCATTATCATCTTAACTAAAAAGACATTTGTAATGGCCTACACATAATAAGTTTTATACGTTGAAATACTTTTGTCTTTAAGAATATCACAGACGAACTTAAGTACATTATCAATAAGAGGTTAAGCCTAAGTATAACTCATTTTTCTAACATGTACATTTTAAAAGTTTAATCACCAAAATTATTACTCTATTAATATTGCAATCTATGTCAGGAAACACTATGGCTATATAACTGTAAAAAAATTTTTAAAGGGTACTCTGTGCAGTTATCTGAGGAAATAAATGTGTAAAATAAATCTATAAACAAACAAATATATAAGTATAATAAATGAATAAAAACAGAAAAACTATAGCCACACAGCGCACGACTCACGGTGACTTATGGAGAACAGCCTGCCTGAGAACCTGCCAGCGCTCCGGCCCTGTGTGCTTGGAAAAAGCAGAGAACTGTTAGGCTCACATTTGCCAGACTCCTGAGGCACGAGTGCCTGAGGGAAGCGCCTGCTGAGGTGGACCCAGAAGAGGATTTCATCGACAGCGTCCAGATGCAGCTTCCGGAGGACTGAAAGGACTGTCCAGAAAGAAGGCGATGCCTTCCGTCCAACAGCTGGGGCGGGCAGACGGAGAGTTGGACTCACAGGTGGCTTTCATTTAGGCCAACGTTGGTTTGACTTTTCCACGGTAATCAGCAGAGCCGTTGTGTTTATGAAAGCGATGAATGAGAGTCTTGTGTTTTAGGAAATGGTTTTGAATTCTCGGTTTCCAAAGTGCAGTGGAGAGGAAGCGGGGTTGATAAAAAACAAAACAAAACAAAAAACAAAAAACCTTTCTCCCCGTCTCATACAACGAGCGGACAACGTAAGGGAGCTGAGCATTTGCCTGACTCTGTTGGATTGCTCACTGTGCTCCGGGATGAGTTCCCACACAGAAAATGTTTCCACAGAGACAGCAGGAGTGGCTTGCCCATGGATTGGCACCGTTGAACTTGTGCGCCTCTGTTGTGGGTGCGCTCTCCATTCACATTCTATTTCATCTTTCTAG
Seq C2 exon
GTTGCTGTTCTTGCTCCTTGGGAAATGGTGAATTACGCTGCCCATCCATAGAGCCAGTAACGAACTCAAGTGCTAGTGGGCCTATGCCTTCTTCCTTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762-Gpr155:NM_001080707:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: