HsaINT0071558 @ hg38
Intron Retention
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174453737-174460088:-
Coord C1 exon
chr2:174459878-174460088
Coord A exon
chr2:174453842-174459877
Coord C2 exon
chr2:174453737-174453841
Length
6036 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
ATACTATTTGATTGATATAGGTT
3' ss Score
6.55
Exon sequences
Seq C1 exon
ATGATCACCACAGCAGTCACCCTGTTCTGCAGCATCCTGATAGCTGGCATATCCCTCATGTGCATGAACCAGACTGCCCAAGCAGGAAGCTATGAAGGTTTCGATCAGTCTCAGAGCCACAAAGTGGTGGAGCCTGGAAATACTGCTTTTGAGGAGAGTCCAGCACCAGTAAATGAACCAGAACTTTTTACAAGCTCTATTCCAGAAACAA
Seq A exon
GTATGATCTTTTTAATTTTATTTTTATTTATTTGAGACAGAATCTTGCTCTATCATCCCGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCTGTGTTTAAGCGATTCTGCCACCTGAGCCTCCAGAGTAGCTAGGACTACAGGTGCCTGCCACCATGCCCTGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGCCCAGGCTGGTCTCGACCTGCTGAGCTCAGGCGATTCACCCGCCTCGGCCTCCCACAGTGCTGGGATTACAGGCATGAGCCAGCCTGATCTTTAAATATAAAGAAACTGCTACATGCCTTTATAGCATGTATCCTAAATGTTTTGTTTATGGGAAACTTCCTTGAACTAGTTTGAATATCATGAGTGCTTGTCAAATGAAGAATTTGAATCATAGTCAACAAACTTGCTTGTAAAATTATTCATTAGATTTTTGTTTATAAGTCTTATTGTGAGTATACACTTTTGTTAAATCCTAAAACTTCCCTGGACCTGAGAATATAGAAAAAAGTAACAACTGAAGGAAGGCCCTAACTAGGAAACGAAGCACATACATAAGTTAATTTAACAATATTGTATCAGGCAAGCACCATCAATAATATGAACTAAAGGAGGCCTGTTTAAAGCCAGATTAATGATGTAAGTCAGTTTTGGGCAAACTATAGTCCATAGGCCAAATCTGGCCCACCACCTGTTTTTGTATGGTCCACCAGCTAAAAATGTTTTTTTTCTTTGTTTGTTTATTTATTTATTTTTGCCACAGAGTCTCGCTCTGTTACCCAGGGTGGAGTGCAGTACCCTTGGCTCACCGTAACCTCTACCTCCTGGGTTCAAGCAATTCGCCTGTCTCAGCCTCCCCAGTAGCTGAGACTACAGTCGCACGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGTCAGGCTGGTCTAGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAATGTGCTGGGATTACAGGTGTGAGCCACTGCACCCAGCCTAAAAATGTTTTTTACATTTTTAAAGGGTTGAAGAAAAATTAAAAGAAGACAAATACTTCGTGACTCTTAAAAACTACATGAAATTTTAATTTCATGTCCATAATTTTATTGAAACATAGCCATGCTCATTCATTTATATATCATCTATGGCTACCTTCATGCTATAATGGCAGAGTTGAGTCTTTGGGGCCTATACTAAGGCAGTAGGTATTGGATAAACAGGAGAGGCCAAACTCAGGCAAAGTTGTATTGACAGGGTTTGGTACTTGATTAGAAGCTGGGTGAGGGCTAAGAGAGAAACTGAGAACAACTTCCAGAAATCTAGTTTAAGTGAATGTATAATTGTGGGTATTACCTAAGAAGAATTCACAGAGAACAGAATATGTAGGGGAAGATAATGAGTTCAATTTGACCCTTCTAAGTTTGAGATGCATGAGACACCAAGGATTCATTTTAGTTTCTCAGTGTACCTCTTAAAATGGGATGCTTAGATCTGAATATAACATTCCAGTTACCATGGTCCTAGGACACAGTGAGCATTCAATATTTGATGAATGCTTGTTGACTGAGTGAAGAATAAGAGAATCATTCCTGTCCTTACTTAGAAAAGAAACTTTTAATTCTGCCTAACATTGCATTAACTTATTCTGATGATTTCATCTTGAATTTATGAGCAACTAAAAACCTGCCTCCCACCCCGAGTACATTACTGAACAGTTTCTCTCCAATCCTGAATTTTTGCATCTGGCTTTTAAAAGTCTAGGACAAAGCTGGGTATGGTTGCTCACACCTGTAACCCCAGCACTTTGGAAGGATTGCTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAGTGAGACCCTGACTCTACAAAAAATAAAAAATTAGCTGGATGTGGTGGTACACACCTGTAGTCCTAGCTACTCAGGAGGCTGAGGCAGGAGGATTGCTTGAGCCCAGGAGGTCGAAGCTGCAGTGAGCCATGGTCACGCCACAGCAATCCAGCCTGGGCAATAGACGTGATCCTGTCTTTAAAAAAAAAGTCAAGGCCTGGTGCGGTGGCTCACACCTCTAATCCCAGAACTTTGGGAGGCTGAGGTGGGCGGATCACAAGGTCAGGAGTTTGAGATCAGCCTGGCTAACATGGTGAAACACCATCTCTACTAAAAATACAAAAATTAGCTAGGTGTGGTGGCGGGTGCCTGTAATCCCAGCTACTCCAGAGGCTGAGGCAGAAGAATCGCTTGAACCAGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCATTCCAGTCTGGGTGACAGAGCAAGACTCTGTCTCAAAAAAAGTCTAAGACAGGACTTCAGTATTTGCCTAAGCCTATCAGGACTGAGATTTCTTTGTGTCTTGATTTGTAATCAAATATATTAACTTATTTATTGTATGGTGCTTCTCTTCTCTTCTTCTCTTCTTTTGAAACAAAGTCTTTCTCTTCTCTTCTTTTGAAACAAAGTCTTTCTCTGTCTCTCAGGCTGGAGCGCAGTGGAGCAGTCTTGGCACACTGCAGCTTCCACCTCCTGGGTTCAAGTAATCCTCCCTCTTCAGCTTCCCAAGTAGCCGGGTCTACAGGTGTGTGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGGTGGGTTTTCACCATGTTGGCCAGGCTGGTCTCGAACTTCTGACCTCAAGTGATCTGCCTGCGTCAGCCTCCCAAAGTGCTGGGAATACAGGCATGAGCCACTGCGCCTGGCCCAGTTTTCTTTTTTAAAAGAAATAAAACTTACCAATAAAGTCAGAATGTTTGTTAGAATCTTTCATTCCTGTTAACTCCAGAAGTAACCACTATTATGAATTTGGATTGTATCCTTCCAGAGCACAATTTTACTATACTTTTACAATATGTGTGGTTTTCCATCAACAATATATAGTATTTTTATATGCTTTTACATTTTTATATAAATCTTATACTGTAGTTGTCTTCTTGCACTCAATATTTTTGAATTCATTTTGTAGATGTAATCAATGATATGCATATACCAAATTTTATTTATTAATTTCCTTATTGATGGATTAAGTTGCTTTAAAATATTTTGCTATTAGAAACAATGCTGTAATGTACAGCTTTATTCACATCTCCTTGAGTATACATCAAGATACATCAAGATTATACCTAGGATGTTGCTGAGTGCAGTGTTTCACACCTGTAATTCTAGCACTTTGGGAGGCTGAGGCAGGTGAATTGCCTAAGCTCAGGAGTTGGAGACCAGCCTGGGCAACATGGCAAAACCCATCTCTACAAAAAATAAAAAATTAGCTAGGCATGGTAGCATGTGCCTGTAGTCCGAGCTACTCAGGAGGCTGAGGTGGGAGGATCACCAGAGCCTGGAAAGCAGAGGCTGCAGTGAGCCAAGAGTGCACCACTGCACTCTGGCCTGGGAAACGGAGCGAGACACTGTCTCAAAAAAAAAAAAAAATTATACCTAGGATGGTAATTCCTGGGTCACAGGAAATAGGTAAGTTCCCATGGCTTTAATGTGAACCCTTTGTACTTTGTTCCTAATGTTGCATCTCTAACCTGACCCCTTTATACAGATCCAATCCCAGATTTCCTGCTGTCTACACATATATTATTTATATCTCAGCCAGGCGTGGTGGCTCACACCTGTAATCCCAGAACTTTGGGAAGCCAAGGCAAGCAGATCACTTGAGGTCAGGTGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAGAATTTGCCAGGCTGTGGTGGCAGACGCCTGTAGACCCAGCTACTCGGGAGGCTGAGGCATGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAAACTTCATCTAAAAAAAAAATAAAAAATTATTTACGTCTCTTTCTGAATACGTGGACAGCACTTGTTCTCTTTGTCAAAGGTACTGGAGCTTTTTAAACAAACAATTATCTTTCTTTTAGTGGTTCCATCATTCTTTAGAACTTCCCAGCTCAGCAACATCTCTGCTGTTTCCCCTTGAGGTGAATTAGCCATTCAGGGCGTGGAGTTCTCCCTCTGCAGGGTCCCCCTCCTCCCCCTGACCTCCCATCTCCCGACTTGGGCCTCCAGTCTCTCTGCTGGATTCTTGTAATTCCCTCCTAACTGAACTTCCTGTTTCTTGTCACTCTGGTCCAGTCTGTTTTATAAGGGAAATGGCCAAATTAACCTTCCTCACGGAGTTCTGGCCACATCAGGCTCCTGCTTCAGAGGCTGCAAGGGCCTTGCAGTGCCCGTGATGCCCAAAGCGCTGCACGTAGTGCCCAAGCCCTTCCACTGCCAGCCATATTCCCTCTCCGAGCCTATTCTGCCACCTCTCCCTGCAGCTGCCTGAGCTACCCAGTGAACCTTCCATTCTTTGGTCCGTCCAGCACTCGGCACTCATGTTATCACTTCTCTTCAGGGCCTTTAAAACCGAAGCTCACTAATTTCTCTGTTTGGTCATTTGTTTGTGTTTTTGTTGTTGTTGTTGTTGTTATTTTTATTTTTATTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGATCATTGTGTAATGATCAAATCAGGGTAATTAGCATATCTATCACTTCAAAATGTATAATTTCTTTGTTGTAGGAACATACAAAATCCTCTCTTCTATTTTGAGATGTACAGTATCTTTGTTGACTATAGCCACCATACTGTATGATAGGGCACTAGAACTTATTCTAATGTAACTTTGTACCTGTTGACCCCATCCCTGCCACCCCCTACCTGCCCAAGTATCCGGTACCCACTACTCATCCTTCCTTCCTTTCCCTTCCTTCTCTTCCTTCCTTTCCCTTCCTTCCCTTCCTTCCTTTTCCTTCCTTTCTTTTCCTTCCTTTCCCTTCCTTCCCTTCCCTTCCTTCCCTTTCCTTCCCTTTCCTTCCTTTCCCTTCCTTCCTCTCCCTTCCTTCCTTTTCCTTCCTTCCCTTCCCTTTCTTCCCTTCCTTTCCTTTCCTTCCTTTCCCTTCCTTCCCTCCCTCCCTCCTTCCCTCCTTCCCTTCTTCCCTCCCTCCTTCCTTCCTTCCTTCCTTCTTTCCCCAGGCTGGAGCGTGACTGCTCCCTGTAATCTCAAACTCCTGGACTCAAGCAGTCCTCCCACCTCATCCTCCCAAGAAGCTGTACTATAGCCATATGCCAGCATGCCCAGCTATTTTTTAAAAAGCTTTTTGTAAAGACAGAGTCTTGCTGTATTACCCAGGCTGATCTTAGGTTCCTAGCCTCGGCTGGGCATGGTGGCTCACACTTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCGCCTGAGGTCGGGAGTTCTAGACCAGCCTGGCCAGCATGGTGAAACCCTGTCTCTACTAAAAATTCAAAAATTAGCTGGGCCTGGTGGCAGGTGCCTGTAATCCCAGCTACTCGGAAGCTGAGGCGGGACAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCCACCTCAAAAAACAAAAAAACAGAACAAAACAAAACAAAATCCTAGCCTTAAGTGATCCTGCCACCTCAGCCTCCTGAAGCAACAGGTGTAAGCTACCATGCCTGGCCACATTCAGTGCTTCTATGAGATTAAGTTTTTTTTATTTTGTATATGAGTGAGAACATTTGAATACTTTTGGATAGATACCATGTGAAAACTATTGAGGCTACATGGGAAGTGTGTGTGAGTGGATTTTGTTTTGTTTTCTTTGGCATTTCTTAAAATTGTCCATTTCTGTTGTGGTTGGGCTCTACTCTCACATACTATTTGATTGATATAG
Seq C2 exon
GTTGCTGCTCCTGCTCCATGGGAAATGGTGAATTACACTGCCCATCAATAGAGCCAATAGCAAACACAAGCACCAGTGAGCCTGTGATTCCTTCGTTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328:ENST00000392552:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development