MmuINT0073077 @ mm10
Intron Retention
Gene
ENSMUSG00000041762 | Gpr155
Description
G protein-coupled receptor 155 [Source:MGI Symbol;Acc:MGI:1915776]
Coordinates
chr2:73356598-73362635:-
Coord C1 exon
chr2:73362425-73362635
Coord A exon
chr2:73356703-73362424
Coord C2 exon
chr2:73356598-73356702
Length
5722 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGA
5' ss Score
4.72
3' ss Seq
ATTCTATTTCATCTTTCTAGGTT
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATGATCACCACGGCAGTCACCCTGTTCTGCAGCATTCTCATAGCTGGGGTGTCACTCATGTGCATGAACCGCACCACCCAAGCTGGTCACTACGAAGGTTTCGGCCAGTCTCAGAACCACAAACCAGTAGAGCCTGGAAGCACTGCGTTTGAGGAGAACCCAGCACCAACAAATGAACCAGAACTCTTCCCAAGTTCTATCCCAGAAACAA
Seq A exon
GTATGAGCCCTACATGTATTTTAAAACTTACAGAAACTGTCACATGTATCTTAGATGTTTTTGTTCAGTGGAAAGTCATTACACTGCTCTAAATAATCTCGGCATTTGTCAAGGGAGCAACTTGAATAATTCTATTAGAGCTTCATTTTTCTAGCACTTCATTCATTGAGCTGAGATGAATGTTTTGTTGAATTCTAAGACTTCCAAGAGAGGCTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGGTGGCTGGATGGATGGATGGATGGATGGTTGAAGCAGGGTCTTATTCTGAAACCCAGGCTGGCCTCAAACTGTTGGTCATCCTGCTTAAGCTTCCTGAGTGCTGGGATTACAGACATGAGCCACCATGCTAGTTTTCAGTGCTGGGGATTGAACCCCAAACTTCACACACACTCAGGAAATATTCTACCTCGAAGCCATATCCCCAGCTTTGACCTGAGAATTTTAGAAGTAAAAGAAAAGGAACATCCTTGCTATGAAACTAAACACATTCATTTCCTACTTTAACAATATTTTATCAGGCAGGTGTCATCAATAAAATGAGTTTTAAGGAGAGACTTGACTTAAGTAAGACTAATCATATAAATTATCCATCTACAGACTATAGCCCAGAAGCCAAATCAGTCTTTCCAACTGATTTTGTGTAGTTTCTCAGCTAAGAAGTTATGTTGTTGTTTTGTTTGTTCTTTTGTTTTTGTACATTTTTTAAAAGATTGATATCAACATAAGATTTTTTTTTCCATTTTTTATTATGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTAAAATCTTGCTAGTGTATGCAAAAGATTTTTTTTTTTATGACTCTTAAAAGTTCTATGAAACTTGAATTTCCTGTCTAAAATGTTGTGGAACATAGTCACACCGATTCACTTATGTGTTGTCAGTAGCTGTGTTCATGCCGGAGTGGCAGAGGTGAATCATTGCTGCAGAGCCCGAATGGGGCCCCTACTGCAGTGAAAACCTGCTCGGGTATTTCATTTTACAGCTATAGTCCATCAGCAAGAACCTAAGGCAGAAGCTGATGTCAGGGAGCTGGAAGAGTGCTGCTCTCTGGCTTGCTCCTCATGGTTTGCTCACCTTACACTTTTACAGCACCCGGGGCCACCAGCCCAGGGATGGTACCAGGGATGGCACCACCAACAGTGAGCTAGGCCTTCCCACATTTAATCATCAATCAAAAAAATGATCTCCAGGCTTGCCCATAGGCCCATAGGCCAGTCTGGTGGGAACATTTTCTCTCTCAACTGAAGTTCTCTTATCTCTAGCTGGTGACAAGTTAACACAAAACTGGCTGGCATGACTGACTCCTTGTCACCTTGACACACAACCACATCACTGTTAAAAAAAAAACACCTCTTCTTTATTATCCATTTCCAAGATCTTATATTAGTATTAATATCACAATATAAAACATTCCAATTTTAAAAGCCCCCACGGTTTTTAATAATTAAAATACTTTAAAAGTTCAGTCTTGGAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAATCAGTCTTTTTAAAAATTGTCTCTCTAAAATAACAAACTTTCTTAACTGTGAGCTTCTGTAAAATTAAAAGTAAACTAAATACTTTGTTACTCCGAGAGAACCAGGTCACAGTCACATTTAGACCAAAGAAAAACCAAAGTCCAACTATGTCAAGCATTTAGGCCTCACGCTCTGGGCTCCAAAGGGCTTGCCCACAGCACACCCAGCTTATCTCCTAGGTCCAGGCCAGCTCCATTCCACAGCTGCTGTCCTCAGTGGCCATCCCATGGTACTGGCATCTCTAAAATGATAGGGTCTCTACTGTACCGGGGTTTCACTTTTACCAATAGCCTCTCCCAAGCCCTCTTTATGGACTCTGACCCTGAAGAGTGATACGGTACCAAGCCTCAACTTCTCTCTATGACTCCTTCAGTCTTGGAGCTTCCGCTTCAGCTGAGGCCACACATTCACCAAAGGTCTCACTGGCCTCTCACAGCACCACCTCAGCTGCTCTCCATGGCCCCTTCATGCCTTTAAAACCAGCACCTGGACGACTTTACACATCACCATGTTCATTCATTCACTGGTGAATGAATGCCAAGTCCAGACTTGATGACCTCTGGGCCACAGCTTCTGTGTGCTGGTCCTGAGGAAACACTTACCAGAAGATTTAACTTCAGGGATTCTGGTCTCTTCTTAACCGCAGATCATTTCTCAGACCCAGTTGGCCAACATCAGTTGTTCCAGGAAAGCAAAGGTTTCACTCAGTGGTCCTGGTCTCTTGTTAATCACAGCTGATTCTTCAGCCCCAGCTGCCCAGAACCACAGATTCTTAATTCAAAATATTAAATGGCCCCATTGGTCTGAAACTTTTCATCAGTACCTCACACACCAGACCTCCATTATCTGGAGGCCTCAGCAATCATTTGCTCTCAGAACTGTTTTCTAAGTTCCCACAGAACAGCCTACTGATCTCTGAGCACTGAATGGCTTTTCCATCCCCAAATTCCAAAACCCTTTCACAATCCTCCCCAAAACATGTCAGGGCCTGTCGCAGCAATACCCCATGAACCTGGTCCCAATTTCTGTCTTAATTAGGGTTATCATTGCTGTGATGAAACACCATGACCAAAAATAACTTGGAGAGGAAAGAATTTATTTCATCTTCTAGTTTATAGTTCATTATCCAGGGAAGTGAGGGCAGGAGCTGATGCAGAGGCCATGGAAGACGGCTGCTTACTGGCTTGCTCCTCGTCGTTTGTTCAGCCTGCTTTTTTACAGCACCCAGGACTCCCTGCCCAGGGGTAGCCCTACCCACCGTGGGTAGATAGCTAGCAATTTATTCATCTGTTTCTTTACTGAGAGACATTTGATTTGCTTGAAACACATCTGTTAGAAGTAGTGCAGCAGTGAACATCTGTATTCATATACGCTTGAGGACTGGTCTTAAGATCGTATTTGTGAGTCATTGGAAATATAACCGCTCATGCAAACCCACTTATGTGGGTCTGGTTCCAGATTTCCTTGGCTTTTAAGTATATTGCTGGAATCTCCTTTTGAATATAGAGGCAGCATTTTTTAATTTTCAGACATACTGTTCCTGTCTCAGTTTCTCAGGATTTCTAACAAACCTCACTGATTTCCTCCTCAAGTGAAAGAGTCATTTAGAGCAAGTAGTTCTTCCTCCGTGGGGTCCGGTGTCTACCCCGGCCTCTATTTCCAGTGTCTGCTAGATTCTTATAATTCCTTTCTAACTGGACCCTTTCCCCCACCTCCCATCATTCTGGGTCCAGTCTAGCTGATGTGAAATGGCCAAGCCAACCTTCCTCTCGAGCTTCTTCCACATCAAACTCCTGCTGTAGTTCAGGTTGAGACCCTCAAGTCCCTCCAGTACCTGATAATTCCTGCTCAATCCGGTTCTTCCTTCTCTCCCTGTGAACACTACCAACTTCTTCGTGCTTTTCCCCAGACTGGCCCTTGTGTCCTCTCTCTCCTTCCTGCTTTTACTGCATAGCCCTTAAACCCAGGCTCACTGACAATCTGTGGTGATGTCATCAGAATTTTATTCTTCCAAGCCTCTTGATGATGTTCCTTTTAAAATTGATTGTCTTAGTTGGGTTTTACTGCTGTGGACAGACACCATGACCAAGGCAAGTCTTACAAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCGTCAAAGTGGGAACATGGCAGCATCCAAGCAGGCATGGTGCAGGAGGAGCTGAGAATTCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGACTTCTAGGCAGCTATGATGAGGGTCTTAGAGCCCACACCCACAGTGACACACCTACTCCAACAGGGCCACACTTCCTAATAGTGCCACTCTCTGGGCTGAGCATCTATAAACCATCACACTGAAAAACTGTAAAACAGTTTCTTTTCTTTTTTTTTTTTTTTTTACAGAGGCCATATTGCTTATTTGTGTGTGTGTGTGTGTGCTCATTTTCTATAGATAAGCCATTGTAATAGCCTCATGTGTTTTCTTAATTTTTACATCTTTTTTATGTAATTTTACTATTTAAACCTTCATGTTTCTGGAGAGCTAGGCTAGATAGTTTATTTTCTCTTCTGTTATTCTGTGGTTCTCTTTCTAACCTTGAGGTGGCATTATCATCTTAACTAAAAAGACATTTGTAATGGCCTACACATAATAAGTTTTATACGTTGAAATACTTTTGTCTTTAAGAATATCACAGACGAACTTAAGTACATTATCAATAAGAGGTTAAGCCTAAGTATAACTCATTTTTCTAACATGTACATTTTAAAAGTTTAATCACCAAAATTATTACTCTATTAATATTGCAATCTATGTCAGGAAACACTATGGCTATATAACTGTAAAAAAATTTTTAAAGGGTACTCTGTGCAGTTATCTGAGGAAATAAATGTGTAAAATAAATCTATAAACAAACAAATATATAAGTATAATAAATGAATAAAAACAGAAAAACTATAGCCACACAGCGCACGACTCACGGTGACTTATGGAGAACAGCCTGCCTGAGAACCTGCCAGCGCTCCGGCCCTGTGTGCTTGGAAAAAGCAGAGAACTGTTAGGCTCACATTTGCCAGACTCCTGAGGCACGAGTGCCTGAGGGAAGCGCCTGCTGAGGTGGACCCAGAAGAGGATTTCATCGACAGCGTCCAGATGCAGCTTCCGGAGGACTGAAAGGACTGTCCAGAAAGAAGGCGATGCCTTCCGTCCAACAGCTGGGGCGGGCAGACGGAGAGTTGGACTCACAGGTGGCTTTCATTTAGGCCAACGTTGGTTTGACTTTTCCACGGTAATCAGCAGAGCCGTTGTGTTTATGAAAGCGATGAATGAGAGTCTTGTGTTTTAGGAAATGGTTTTGAATTCTCGGTTTCCAAAGTGCAGTGGAGAGGAAGCGGGGTTGATAAAAAACAAAACAAAACAAAAAACAAAAAACCTTTCTCCCCGTCTCATACAACGAGCGGACAACGTAAGGGAGCTGAGCATTTGCCTGACTCTGTTGGATTGCTCACTGTGCTCCGGGATGAGTTCCCACACAGAAAATGTTTCCACAGAGACAGCAGGAGTGGCTTGCCCATGGATTGGCACCGTTGAACTTGTGCGCCTCTGTTGTGGGTGCGCTCTCCATTCACATTCTATTTCATCTTTCTAG
Seq C2 exon
GTTGCTGTTCTTGCTCCTTGGGAAATGGTGAATTACGCTGCCCATCCATAGAGCCAGTAACGAACTCAAGTGCTAGTGGGCCTATGCCTTCTTCCTTTGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041762:ENSMUST00000076463:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.422 A=NA C2=0.084
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types