BtaINT0070151 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000704 | GUSB
Description
Bos taurus glucuronidase, beta (GUSB), mRNA. [Source:RefSeq mRNA;Acc:NM_001083436]
Coordinates
chr25:28171186-28171866:-
Coord C1 exon
chr25:28171679-28171866
Coord A exon
chr25:28171339-28171678
Coord C2 exon
chr25:28171186-28171338
Length
340 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CCCAGTGCTCGATTTCGCAGGTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GGCTGGTGAATTACCAGATCATCGTCCAGGGCAGTGACCACTTCCAAGTGGATGTGTCTCTTCTGGATGAGGAAGGCAAAGTTATGGCCAAAGGGGCAGGGGCCGAGGGCCAGCTGCAGGTGCCCAGTGCCCACCTCTGGTGGCCGTACCTGATGCACGAGCACCCTGCCTACCTGTACTCGTTGGAG
Seq A exon
GTAATGGTGGTGAGGATTGGGCTGGGGGAGGCCATTTGCCCCCATCCAGCAGCCCTAGCTTCAGCAGGCCTGGTCCCCTCAGCTTCCTGGTCCATTGGATTGAAGAGTCCCCAGCCTGATTTTTTTCAGCCATTGGTGGGGAGGCTGAGTTGGAAGAGAAGCCCCGCGGCAGTGTGGGCAAAAGTTTCTTCTTGCTCACGGCAGATATAATTTCTGCCTCTCTCCACCTGCAGACCCAGAGGTGGGCCGTGGTGATTTGCCAGGGGCTGTCCTGCGAAGCTCAGGCTGCGTGGGGCTCAGGCCGGTCAGGCTGCCTCATGCCCAGTGCTCGATTTCGCAG
Seq C2 exon
GTGAAGCTGACGGCGCAGACGGCCGTGGGGCCTGTGTCTGACTTCTACACCCTCCCGGTGGGGATCCGCACCGTGGCCGTCACCAAGAGCCAGTTCCTCATCAATGGGAAGCCATTCTATTTCCGAGGGGTCAACAAGCATGAGGATGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000704:ENSBTAT00000000941:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(60.8=100)
A:
NA
C2:
PF0070316=Glyco_hydro_2=PD(21.6=43.1),PF0283612=Glyco_hydro_2_C=PU(8.6=51.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTACCAGATCATCGTCCAGGG
R:
CCTCATGCTTGTTGACCCCTC
Band lengths:
326-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]