RnoINT0068789 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30205719-30206864:+
Coord C1 exon
chr12:30205719-30205906
Coord A exon
chr12:30205907-30206720
Coord C2 exon
chr12:30206721-30206864
Length
814 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACG
5' ss Score
9.65
3' ss Seq
GGCACATCGACTCCCCCCAGGTG
3' ss Score
6.75
Exon sequences
Seq C1 exon
GGCTGGTGAACTACTGGATTTCTGTCCAGGGCAGTGACCATTTCCAGCTAGAAGTGCGTCTTCTGGATGAGGATGGCAAAATTGTGGCCCGTGGAACAGGGAATGAGGGTCAACTTAAGGTGCCGCGTGCCCACCTCTGGTGGCCTTACCTGATGCATGAGCATCCAGCCTACCTGTACTCCTTGGAG
Seq A exon
GTAACGGGGACTTTAGACTGGAGCTAAGGAAGGTCCTTTGCTGCCACCTGGTGACATCAGGAGGCATCCAGGACCGGTGGCTAACTGGGTATAGGCTGAGATTTCTGGCTTTTTCTATCCCTTTGTGGGAGAGTCCAGCTGGGAAGAGTAGCTCCTGAGATCTTGTAATTTCTGCATCTCAGGGGCAGGCTTGTGGAATACACAGGGCCCGGGATATTGGATAATTGGATAAAATAAATGTAGTAGTTGAGGCCAGCCTGGTCTCCATAGTGAATTCCAGGACAGTCAGAGCTACACAGTGAGACCCTGTCTCAAATGATCAGTTACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCCCTGCAACAAAACAAAACCCAAAACCAGCTGGGCTGCGGTGGCACACACCTTTAATCCCAGAATTTGGGAGCGGAGGCAGGTGGATCTCCATAAGTTTGAGGCCAGCCAGGTCTATGGAGCAAGTTCCAGGACAGCTAGGGCTCCACAGAGAAACCCTGTTGTGAGAAACAAAACAAACCCAAAAACATAAACAGAAAACCAAGCCAAACAGATAAGGGTGCCTGCAATCTTAGCACTTGGGAGGGACAGGCAGGAGAATCAGGAGTTCAAGGCCCTCCTTAGCTACAAGTGAGTTTGAGGCCAGCCTGAACCACGTGAGACTCTAGTTTAGAAAAAAACAAAGAGCTCAAGTGTTAGGTGATGTGGGACTTGCTGTTGGGTGAGGCTCAGTCCACCTGGGTGCTTATATCTGGCACATCGACTCCCCCCAG
Seq C2 exon
GTGACGATGACAACACCTGAGTCTGTGTCTGACTTCTATACCCTCCCTGTCGGGATTCGAACAGTGGCTGTCACAAAGAGCAAGTTCCTCATAAATGGGAAGCCTTTCTACTTCCAAGGCGTCAACAAGCATGAGGATTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(62.6=100)
A:
NA
C2:
PF0070316=Glyco_hydro_2=PD(19.2=39.6),PF0283612=Glyco_hydro_2_C=PU(8.6=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGTGAACTACTGGATTTCT
R:
ATCCTCATGCTTGTTGACGCC
Band lengths:
326-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]