GgaINT0132584 @ galGal3
Intron Retention
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4893701-4894518:-
Coord C1 exon
chr19:4894331-4894518
Coord A exon
chr19:4893854-4894330
Coord C2 exon
chr19:4893701-4893853
Length
477 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACA
5' ss Score
8.1
3' ss Seq
CCTTCCCTTTGGGAACCCAGGTG
3' ss Score
4
Exon sequences
Seq C1 exon
CAATGGTGCGATATCAGATATCGGTAGTTGGCAGCGAACTCTATTCCTTGTCTCTGAGTTTACGTGACCAAGAAGGGAAAGTGGTTGCTACAGGCGATGGGCCATCTGGAGAGCTAAAAGTGCCAAATCCAAACCTGTGGTGGCCTTATCTGATGCACGAGAACCCTGGATACCGCTACTTCTTAGAG
Seq A exon
GTAACAGTGACATCTCTTCCTTCCTGTGTGCATTTCTTCTCACTGTATAATAGCGTTAAGGAACTGCCGTATGGCCCATCTTTCTTATTTTTGCTCTCCCCTGGATCCTGTTTATGTCTCTAGAATGGCATTACTCATTATGCTGTAACCAAATTGAGCTCTGGATCCCAAATGGGAAGGTTGGTGGTGAGAAGAGCAGGGCACACCTGGAGCGCACCCATGTGCTCTCAGATGCTTGCCTCTCACACCTATGGCCTGATCTGCCTGCTGCAGAAGGACTATTTGAAGCAGTGTGAGGGAGGAGATGCTGCATGACGGAGGGCAGAGTGTCTGGGAAGCAGGCTGAGCTCCTCTTTCACATATATTGCCATGCAATGAGCTTTCTTCCCGCTCTGCACAGAGTGCAGCACCCATAGACAGCTTAGAGGGCTCAGCCACTCCCAGCCCCTCACACACACCTTCCCTTTGGGAACCCAG
Seq C2 exon
GTGAAAATGCAGGCGCAGGCCAGCGGTGTGCCACAGGAGGACATCTACACACTGCCGGTTGGCATCCGCACCGTGCACGTCACCAGCACGCAGTTCCTCATCAACGGAAAGCCCTTCTACTTCCACGGGGTCAACAAGCACGAGGACGCGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542:ENSGALT00000004011:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0070316=Glyco_hydro_2=FE(60.8=100)
A:
NA
C2:
PF0070316=Glyco_hydro_2=PD(21.6=43.1),PF0283612=Glyco_hydro_2_C=PU(8.6=51.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATATCGGTAGTTGGCAGCG
R:
ATCCGCGTCCTCGTGCTT
Band lengths:
326-803
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]